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ViralFusionSeq [VFS]

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** Announcement 1 **: VFS is officially described in Bioinformatics

** Announcement 2 **: 1 minute crash course of VFS now available in sourceforge's "Wiki" section

** Announcement 3 **: Any immediate concern about Installation issue(s) / question(s) should be addressed to marcowanger@gmail.com

ViralFusionSeq (VFS) is a versatile high-throughput sequencing (HTS) tool for discovering viral integration events and reconstruct fusion transcripts at single-base resolution.

VFS combines soft-clipping information, read-pair analysis, and targeted de novo assembly to discover and annotate viral-human fusion events.

A simple yet effective empirical statistical model is used to evaluate the quality of fusion breakpoints.

Minimal user defined parameters are required.

Source code with user manual and installation guide of VFS is available at sourceforge's "Files" section.

For indexing purpose: Viral Fusion Seq

Applicable and fully tested using RNA-Seq and DNA-Seq data, Utilize both clipped-sequence (CS) and paired-end (RP) information to discover viral integration, Re-construction of fusion transcript sequence using CS and RP information

ViralFusionSeq [VFS] License - GNU General Public License version 3.0 (GPLv3)

Free download from Shareware Connection - ** Announcement 1 **: VFS is officially described in Bioinformatics** Announcement 2 **: 1 minute crash course of VFS now available in sourceforge's "Wiki" section** Announcement 3 **: Any immediate concern about Installation issue(s) / question(

Publisher: Viralfusionseq | License: Freeware | Price: 0.00
Version: 2012.12.07 | Size: 70208 KB | Platform: Linux
Released Date: | Rating: 0 | Title: ViralFusionSeq [VFS]

Author Url: http://hkbic.cuhk.edu.hk/
Program Info Url: http://hkbic.cuhk.edu.hk/
Download Url: http://sourceforge.net/projects/viralfusionseq/files/latest/download?source=directory
Screenshot Url: http://sourceforge.net/projects/viralfusionseq/screenshots/SEQwiki.1.png

ViralFusionSeq [VFS] related downloads:

VFS - VFS (Virtual File System) is a Web-based system that allows authorised users to upload and download files.

Hermes VFS Browser - Hermes VFS Browser was created as a small, accessible and useful tool that acts as a file system browser.

commons-vfs-grid - Commons VFS is a standarised VFS layer for Java, developed by the Apache project. Commons VFS Grid is a collection of file system providers for Commons VFS, which provide SRB, GridFTP and other Grid file systems.

DCTM VFS Provider - Apache Commons VFS Provider for Documentum, plugin for JCommander and VFS bridge for Apache Mina FTP Server

enfs - A user level VFS layer - A virtual file system layer (VFS) that is portable and runs purely in user space. It provides an NFS v2 front end and a BSD-like VFS backend. Dynamic file system modules may be loaded to provide proxies, features or interfaces.

Shareware Connection periodically updates pricing and software information of 'ViralFusionSeq [VFS]' from company source 'Viralfusionseq' , so some information may be slightly out-of-date. You should confirm all information before relying on it. Software piracy is theft,  Using 'ViralFusionSeq [VFS]' crack, password, serial numbers, registration codes, key generators is illegal and prevent future development of ViralFusionSeq [VFS].

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