Software Listing: Tomography

Acoustic tomography involves sending a sonic signal across a measurement area and timing how long it takes to travel the distance. A number of transducers are situated around the measurement area to achieve this. Since the absolute sonic speed is affected by temperature and wind speed, so is the time of flight. It is possible to reconstruct the temperature and wind velocity from the collection of time-of-flight data. This package gives an example of using radial basis function networks to allow for a linear solution to the inverse problem. The example data is from a Karman vortex street behind a cylinder.

  • Platform: Matlab, Scripts

Reconstruction technique of internal velocities structure of massives using tomography method. The reconstruction uses as input data the recorded traveltime of direct propagating seismic waves and spatial coordinates of emission and reception points.
Seismic Refraction Tomography License - GNU General Public License (GPL).

  • Platform: WinOther
  • 3Depict
  • License: Freeware
  • Price: 0.00
  • Rating

This software is designed to help users visualize and analyze 3D point clouds with an associated real value, in a fast and flexible fashion. The primary use is in Atom Probe Tomography, which is an atomic imaging technique. However the program may also be useful in other areas, such as geospatial data, lidar, etc..

  • Platform: Linux, Mac OS X, Unix, WinOther
  • CTAS
  • License: Freeware
  • Price: 0.00
  • Rating

CTAS package is a set of tools for the Computed Tomography (CT) and Tomosynthesis (TS) reconstruction for the parallel beam geometry (usually available at the synchrotron sources)..

  • Platform: Linux, Unix, WinOther

Electrical Impedance Tomography and Impedance Spectroscopy software that I am developing for my PhD project..

  • Platform: WinOther

The Mechanical Engineering Department at Oregon State University currently has high-resolution x-ray tomography equipment that allows three-dimensional imaging of the interior of objects. Their existing imaging software is command line based and difficult.

  • Platform: Linux, Mac OS X, WinOther
  • XRaySim
  • License: Freeware
  • Price: 0.00
  • Rating

Open-source Computed Tomography/ Radiography simulation package. XRaySim works seamlessly with commercial CAD packages and performs highly detailed scan simulations, with virtual X-ray sources and detectors, simulating cracks/ inclusions etc. very easily.

  • Platform: WinOther

fcnFirstOrderStatisticsFilter performs noise filtering on an image based on using First Order Local Statistics around a prespecified pixel neighborhood. The method is based on [1] J. S. Lee, "Digital image smoothing and sigma filter," Computer Vision, Graphics and Image Processing, vol. 24, no. 2, pp. 255 269, 1983. [http://dx.doi.org/10.1016/0734-189X(83)90047-6] The implementation is as based on [1] D. Sheet, S. Pal, A. Chakraborty, J. Chatterjee, A.K. Ray, "Image quality assessment for performance evaluation of despeckle filters in Optical Coherence Tomography of human skin," 2010 IEEE EMBS Conf.

  • Platform: Matlab, Scripts
  • nucmed
  • License: Freeware
  • Price: 0.00
  • Rating

Plugin for ImageJ software, to recontruction Tomography Images
nucmed License - GNU Library or Lesser General Public License (LGPL).

  • Platform: WinOther
  • PyTom
  • License: Freeware
  • Price: 0.00
  • Rating

PyTom is a toolbox developed for interpreting cryo electron tomography data. All steps from reconstruction, localization, alignment and classification are covered with standard and improved methods.

Related publications
http://www.sciencedirect.com/science/article/pii/S1047847711003492

http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6235823&tag=1

https://www.cell.com/structure/abstract/S0969-2126%2812%2900232-8?script=true
PyTom License - GNU General Public License version 3.0 (GPLv3).

  • Publisher: Pytom
  • Date:
  • Size: 5251 KB
  • Platform: Linux, Mac OS X

EGEETomo aims at creating a grid oriented tool to perform tomographic reconstruction on the field of electron microscopy. It is specially designed to work on the EGEE grid but could be easily adapted to other grid platforms.
Grid computing enabled tomography License - GNU General Public License (GPL).

  • Platform: WinOther

enhance imaging system to analyze bio-rad images
Polychromatic Tomography License - Open Software License 3.0 (OSL3.0).

  • Platform: WinOther

The aim of this project is to facilitate the development of open source software for the acceptance testing of commonly used PET (positron emission tomography) systems in accordance with published NEMA standards.
PETAccept License - GNU General Public License (GPL).

  • Platform: WinOther

PET/CT Fusion software is an open source software designed to improve the physician's ability to interpret the results of combined positron emmission tomography (PET) and computed tomography (CT) studies.
Medical Image Fusion License - GNU General Public License (GPL).

  • Platform: WinOther
  • EIDORS
  • License: Freeware
  • Price: 0.00
  • Rating

EIDORS (electrical impedance and diffuse optical tomography reconstruction software) provides software, algorithms and reference data for image reconstruction and modelling.
EIDORS License - GNU General Public License version 2.0 (GPLv2).

  • Publisher: Eidors3d
  • Date:
  • Size: 6166 KB
  • Platform: Linux, Mac OS X, WinOther
  • XRDUA
  • License: Freeware
  • Price: 0.00
  • Rating

XRDUA is a powerful open source instrument that was developed to automate the processing of 2D X-ray diffraction images. This is done by scanning (μ)XRPD or (μ)XRPD tomography.

The software accepts images from flat area detectors. Furthermore, XRDUA allows you to perform various corrections. The primary goal is to visualize crystalline phase distributions in projection (2D scanning) or in a virtual cross section (tomography) of the object under investigation.

Apart from the amount of material, structural properties and their changes within the object can be calculated and visualized as well.

  • Platform: WinOther

Stratovan Maxillo is a handy tool especially designed to help maxillofacial researchers to run their analysis.

It loads DICOM scans directly from x-ray computed tomography images, enabling them to analyze skull morphology and the eye socket position. The images can be exported as PLY, OBJ or STL.

.

  • Platform: Win7 x64, Windows 7, WinOther, WinVista, WinVista x64

Unic-Vision is a 3D medical imaging software company that offers a superior computer assisted diagnostics (CAD) platform and related components for more accurate and efficient diagnosis and treatment of patients.
Unic-Vision products can more effectively analyze computer tomography (CT) scans for early detection of abnormalities that may otherwise be overlooked by radiologists and other
medical professionals using software available in today?s marketplace. Unic - Vision?s sophisticated imaging features are coupled with a much higher level of accessibility and convenience for the user via its PC and laptop compatibility.

  • Publisher: Unic-Vision
  • Date: 17-10-2011
  • Size: 1809 KB
  • Platform: Win2000, Win7 x32, Win7 x64, Windows Server, WinOther, WinVista, WinVista x64

3Depict is a handy, easy to use application specially designed to help users visualize and analyze 3D point clouds with an associated real value, in a fast and flexible fashion. This software was developed to allow for analysis of scientific datasets commonly encountered in atom probe tomography. You can manipulate, interact with and analyse point based datasets. FEATURES: · Fast openGL based graphics · Customizable analyses · Integration with external programs · Works wherever you do.

  • Platform: WinOther

Unic-Vision is a 3D medical imaging software company that offers a superior computer assisted diagnostics (CAD) platform and related components for more accurate and efficient diagnosis and treatment of patients. Unic-Vision products can more effectively analyze computer tomography (CT) scans for early detection of abnormalities that may otherwise be overlooked by radiologists and other medical professionals using software available in today's marketplace. Unic - Vision's sophisticated imaging features are coupled with a much higher level of accessibility and convenience for the user via its PC and laptop compatibility.

  • Publisher: Unic-Vision
  • Date: 01-05-2012
  • Size: 2765 KB
  • Platform: WinOther

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