Software Listing: Metabolic Control Analysis

  • Kintecus
  • License: Shareware
  • Price: 645
  • Rating

The Kintecus simulation software has been cited in many peer reviewed journals: J. Phys. Chem.A, PCCP, J. Biol. Chem., Plas. Chem. Plas. Proc., Int. J. Chem. React. Tech, Arch. Bio. Chem. Bio. Phys., THEOCHEM, etc. It is an Industrial Strength/Research Grade chemical modeling, chemical kinetics and equilibrium software for simulation of combustion, nuclear, biological, enzyme, atmospheric and many other processes via a graphical interface. Kintecus features the ability to quickly run Chemkin models. Multiple Chemkin/freestyle thermodynamic databases can be used. Isothermal/Non-isothermal, adiabatic constant volume, constant pressure (variable volume) can easily be modeled with a flick of a switch.

  • Platform: Win2000, WinXP, Win7 x32, Win7 x64, Windows 8, Windows 10, WinServer, WinOther, WinVista, WinVista x64

Crude Metabolic Pathway Analysis visualization software. For a software engineering class.
Metabolic Pathway Designer and Analyzer License - Public Domain.

  • Platform: WinOther
  • GeXpert
  • License: Freeware
  • Price: 0.00
  • Rating

GeXpert is an expert system that can be used for genetics and metabolic pathway analysis. GeXpert can help Biotechnologists do their work faster, reducing the time required for performing, analyzing and storing the results of Bioinformatics research..

  • Platform: Linux, Unix, WinOther
  • OpenFLUX
  • License: Freeware
  • Price: 0.00
  • Rating

Modern MATLAB-based modelling software for 13C metabolic flux analysis (MFA)..

  • Platform: WinOther
  • iMS2Flux
  • License: Freeware
  • Price: 0.00
  • Rating

iMS2Flux is a command line based high-throughput processing tool set for stable isotope labelled mass spectral data targeting metabolic flux analysis. To get started simply download and unzip the iMS2Flux.zip file and follow the getting started document for your OS.
Operating system(s): Platform independent., Requirements: PERL v.5 or higher., A windows based GUI is also available (see Files>FluxY GUI.zip)..

  • Publisher: Ims2flux
  • Date:
  • Size: 968 KB
  • Platform: Linux, Mac OS X, WinOther
  • SBML-MCA
  • License: Freeware
  • Price: 0.00
  • Rating

Tools to perform metabolic control analyses on biochemical network models in SBML format. Allows computation of first and second order response coefficients, elasticities, first order control coefficients and first order spectral response coefficients.
SBML-MCA License - MIT License.

  • Platform: WinOther
  • pygibbs
  • License: Freeware
  • Price: 0.00
  • Rating

This project is aimed at providing useful thermodynamic tools for biochemists, including formation energy estimation of virtually every biochemical compound and metabolic pathway analysis and profiling.
pygibbs License - MIT License.

  • Platform: WinOther

StochPy (Stochastic modelling in Python) is an easy-to-use package, which provides several stochastic simulation algorithms (SSAs), which can be used to simulate biochemical systems in a stochastic manner. Further, several unique and easy-to-use analysis techniques are provided by StochPy. SSA's try to describe the time evolution of a reacting system, such that it takes into account discreteness and stochasticity. Discreteness and stochasticity play often important roles in biochemical systems. Therefore, SSA's are widely used to simulate biochemical systems. Especially for biochemical systems that contain low copy numbers.

  • Platform: WinOther

Guineu is a handy, easy to use, Java based tool designed to help you with the analysis of metabolic data.

So, if you needed a tool to help you check out metabolic data, give this program a try and see if its capabilities are enough to satisfy your needs.



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  • Platform: WinOther

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  • Publisher: WinSOFTLIVE
  • Date: 06-09-2007
  • Size: 3809 KB
  • Platform: Win2000, Windows Server, Windows Vista, WinOther

FREE fully-featured comprehensive Risk Management assessments software solution tools. This objective-centered risk software focuses on qualitative risk and control analysis, and is aligned with ISO31000. It contains all required registers: risk, control, reliability, key risk indicators (KRIs), incidents, objectives, opportunities, assurance needs & plans, top priorities, maturity model, etc. Educational in nature, the application automatically shows countless meaningful color-coded outputs. You can instantly create risk & reliability heat maps, control heat tables, and hundreds of charts.

  • Platform: Win7 x32, Win7 x64, Windows 8, WinOther, WinVista, WinVista x64

MM4XL is a comprehensive collection of business analysis software tools used to make professional strategic management decisions. In MM4XL software you will find lots of marketing examples, detailed explanations of management theories, and a comprehensive suite of strategic management software tools all in one single Excel add-in. MM4XL Software Tool Categories for Business Analysis: (1) Strategic Marketing Management Tools: Business analysis tools based on sound management theory and rich in marketing examples; (2) Market Research Tools: All the market research software tools for professional survey research planning and survey data analysis; (3) Sales Analysis Tools: Sales and marketing performance management tools for the analysis of sales, trends and marketing data in Excel; (4) Market Segmentation Tools: Business analysis tools...

  • Platform: WinOther

The Katsura tool overlays microarray gene expression data, proteomics, and similar biological data onto metabolic pathways. [Pathogen Functional Genomics Resource Center (PFGRC) @ J. Craig Venter Institute (JCVI)].

  • Platform: WinOther

m and .mdl files to reproduce figures in the book, Feedback Control of Dynamic Systems, 5th Ed., Prentice-Hall, 2006 Featuring a brand new chapter on nonlinear systems, this revision of the best-selling textbook on feedback control has been recognized for even greater instructor flexibility and student readability. Design is emphasized throughout as well as analysis techniques to provide motivation for the study of control. The authors include many carefully worked-out examples to illustrate the material, as well as review questions to assist students in verifying that they have learned the material.

  • Platform: Matlab, Scripts

xlPrecision is an Add-In for Microsoft Excel that provides vastly more precise results from mathematical formulas than Excel provides on its own. xlPrecision makes your calculation results up to 2,183.47 times more precise by providing up to 32,767 "significant digits" of precision, compared to only 15 with Excel alone. xlPrecision also empowers you to use vastly larger (and vastly smaller) numbers than Excel allows on its own. With xlPrecision, you can use gigantic numbers with over 106 TIMES as many digits as Excel allows, as well as extremely tiny numbers with over 106 times as many zeroes to the right of the decimal.

  • Platform: Win2000, WinOther
  • iFlow
  • License: Freeware
  • Price: 0.00
  • Rating

iFlow is an open source visualization software that transforms programs into interactive control flow graphs. It can be used for educational or presentational purposes. APIs are provided for potential control analysis or even compiler optimizations.
iFlow License - Academic Free License (AFL); GNU General Public License (GPL).

  • Platform: WinOther
  • FluxY
  • License: Freeware
  • Price: 0.00
  • Rating

FluxY is specially developed as an accessible high-throughput processing tool set.

FluxY is built for stable isotope labelled mass spectral data and can be used for metabolic flux analysis.


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  • Platform: WinOther
  • Pysces
  • License: Freeware
  • Price: 0.00
  • Rating

Pysces is an application built using the Python programming language that provides a variety of instruments for the analysis of cellular systems.

Now you can make use of this handy software to perfrom various cellular system simulations.

For a network of coupled reactions it does a stoichiometric matrix analysis, calculates the time course and steady state, and does a complete control analysis.



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  • Platform: WinOther

This GUI can be used to analze control systems in time domain, in frequency domain and using using state space analysis techniques. It also provides an additonal feature of designing a second order system in state space design using pole placement approach..

  • Platform: Matlab, Scripts

RadarCube is a fast and powerful ASP.NET OLAP control providing you with a unique chance of supplying the web site with the MS Analysis 2000 or 2005 client abilities. It is entirely authored in C# 2.0 and can be an excellent substitute for the OWC PivotTable control. The main features are: - Royalty free! - 100% managed (C# 2.0), no ActiveX code - All ASP.NET 2.0 advantages. 100% AJAX - Supports IE 5.5+, Firefox 1.1+, Opera 9.0+ - Supports the Microsoft Analysis Server 2000, 2005 or local cube files using ADOMD.NET 9.0 - Two working modes: cube browsing and displaying the results of any MDX-queries.

  • Platform: Linux, Linux Gnome, Mac OS X, Win2000, Windows Server, WinOther

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