Freeware Listing: Solvermatlab

C-Library & Matlab Toolbox implement a numerical solution of Poisson equation div(e*grad(u))=f for Cartesian 1D, Cartesian 2D and axis-symmetrical cylindrical coordinates with respect to steeply varying dielectrical permittivity e. Library uses regular rectangular grid with mixed boundary conditions, FVM-based equation discretization and iterative methods for solving sparse linear system. MATLAB VERSION: 6.5 - 7.9 FILES: C-LIBRARY: COMMON.C, COMMON.H - data types, memory management LINALG.C, LINALG.H - solution of tridiagonal system PSN_1D.C, PSN_1D.H - 1D Poisson solver PSN_2D.C, PSN_2D.H - 2D and Cylindrical Poisson solver MATLAB TOOLBOX: PSN_1D_MEX.

  • Platform: Matlab, Scripts

C-Library & Matlab Toolbox implement a numerical solution of Poisson equation div(e*grad(u))=f in Cartesizan 3D coordinates with respect to steeply varying dielectrical permittivity e. Library uses regular rectangular grid with mixed boundary conditions, FVM-based equation discretization and iterative methods for solving sparse linear system. The solver can accommodate the severe jumps in dielectric permittivity typical of ion channels (d?TA=80 and d?TA=2 respectively for water and protein) and includes a Poisson-Boltzmann (PB) extension providing a solution of the linearized PB equation. The solver has been designed to calculate forces and potentials for single/multiple charges in model ion channel model with different parameters MATLAB VERSION: 6.

  • Platform: Matlab, Scripts

Solvermatlab: Freeware | All

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