Freeware Listing: Sdf

SDF is aimed at setting the figure fonts and line sizes to a comfortable viewing and exporting and is best suited to plots whose result is difficult to adjust The function is useful in presentation where custom fonts (larger or smaller) are needed to present or exclude a certain result. It can be used in tutorials, lectures, courses, presentations, etc..

  • Platform: Matlab, Scripts

SDF or Structures Data File is a file format developed by MDL to handle a list of molecular structures with associated properties. The SDF toolkit provides small tools to read and parse SDFs, filter, and add/remove properties.
SDF Toolkit License - BSD License.

  • Platform: WinOther

SDF(Site Development Framework) is a web based applications and object oriented PHP framework.
SDF - Site Development Framework License - GNU General Public License (GPL); Open Software License 3.0 (OSL3.0); PHP License.

  • Platform: WinOther

Created as a simple and useful software utility, convertSDFtoXLS can help you convert SDF files to XLS ones.

convertSDFtoXLS is a Java-based utility that can be accessed from the Command Line Interface. All you have to do is load the SDF file and type the output folder.


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  • Platform: WinOther

The freeware program CONVERT from KilletSoft converts data files to other data formats and character sets. For the import in MySQL or SQL databases the \'CREATE TABLE\' script can be generated. Thus the import of the data in any data base management system or file system will be possible. Conversions between this data formats are possible: CSV (Comma Separated Value), SDF (Simple Document Format), dBase (Borlands data base format). Conversions between this character sets are possible: ANSI (American National Standards Institute) [single byte WINDOWS standard], ASCII (American Standard Code for Information Interchange) [single byte character set], UTF8 (Unicode Transformation Format) [multi byte character set], Unicode (Universal Character Set) [double byte character set].

  • Platform: Tablets, Win2000, Win7 x32, Win7 x64, Windows 8, Windows CE, Windows Mobile, Windows Phone 7, Windows Phone 8, Windows RT, Windows Server, Windows Vista, WinOther, WinServer, WinVista, WinVista x64

The KilletSoft freeware program CONVERT converts dBase, CSV, SDF and MySQL data bases into other data formats. The program can be used from the command line and from the user interface. The data can be filtered horizontal and vertically and sorted in other orders. Thus the import of the data in any data base management system or file system will be possible. With the program for example you can convert dBase data into the SDF format (Simple Document Format) or into the CSV format (Comma Separated Value). For the output file can be selected between the character sets ANSI (Windows), ASCII / OEM, Unicode and UTF8.

  • Platform: Win2000, WinOther

The KilletSoft freeware program CONVERT converts dBase, CSV, SDF and MySQL data bases to the required data formats and character sets. The program can be started from the command line or can be used with the user interface. The data can be filtered horizontal and vertically and sorted in any orders. Thus the import of the data in any data base management system or file system will be possible. With the program for example you can convert dBase data into the SDF format (Simple Document Format) or into the CSV format (Comma Separated Value). For the input and output files character sets can be selected as ANSI (Windows), ASCII / OEM, Unicode and UTF8.

  • Platform: Win2000, WinOther

JTabler is for the simple table manager to utilize other programs, including many internet utilities, statistics tools, especially adapted for chemistry data such as SDF and MOL.

  • Platform: Linux, Mac OS X, WinOther

A tool to convert mol or sdf files to SVG - scalable vector graphics. Sdf and mol files are files containing information about chemicals. The tool is written in PHP..

  • Publisher: binofo.com
  • Date: 11-10-2012
  • Size: 13 KB
  • Platform: Linux, Mac OS X, WinOther

An open-source software to convert SDF files into TINKER XYZ files (and viceversa) with automatic assignment of MMFF94 atom types, bond types and charges.

  • Platform: WinOther
  • sdf4j
  • License: Freeware
  • Rating

sdf4j is a Java framework to manipulate Static Dataflow graphs (SDF)..

  • Platform: Linux, Mac OS X, WinOther

DBEngine to connect to multiple DatabaseTypes like MySQL, MSSQL, SDF, XLS, Access 97-2000 (mdb) Access 2007+ (accdb)
Multipurpose .NET 4.0 DatabaseEngine License - Creative Commons Attribution Non-Commercial License V2.0.

  • Platform: WinOther

SDFCherry is a command-line program that searches for textual matches in molecular structure files of SDF format and outputs the structures that match. Optionally adds a data field to the matched structures, e.g., biological activity. Useful for QSAR.
SDFCherry License - GNU General Public License (GPL).

  • Platform: WinOther

CompactView is a viewer for Microsoft+eT* SQL Server+eT* Compact Edition (SQLCE) database files (*.sdf). CompactView can open database files of versions 3.1, 3.5 and 4.0.

CompactView need the following installed software to run it:
Microsoft+eT* .NET Framework 4.0
Microsoft+eT* SQL Server+eT* Compact Edition (versions as needed, at least one):
Version 3.1
Version 3.5
Version 4.0


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  • Platform: Win7 x64, Windows 7, WinOther, WinVista, WinVista x64

A program to run queries against Microsoft SqlServer Compact edition files (.sdf) and retrieve some database info. The latest version works with sdf files version 3.0, 3.5, 4.0 and has database drivers included.
Features: command history, syntax highlighting, autocomplete, data export, query and DDL generation and database utilities (create, update, compact, repair)


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  • Platform: Win7 x64, Windows 7, WinOther, WinVista, WinVista x64

EGBrowse application was designed to be a fully featured dBase browser, and file creator EGBrowse application was designed to be a fully featured dBase browser, and file creator. EGBrowse can open any dBase file, look at, export and import Memo fields, sum columns, be indexed on any column or on very complex dBase native language expressions. You can also use the same tens of dBase functions to filter the file. EGBrowse includes textual help that explains all of the usable dBase commands and functions that are understood, along with examples. EGBrowse is a normal, modern 32 bit application with a main menu and a lot of speed buttons.

  • Platform: WinOther

Open3DQSAR x64 is an open-source tool aimed at pharmacophore exploration by high-throughput chemometric analysis of molecular interaction fields (MIFs). Open3DQSAR can generate steric potential, electron density and MM/QM electrostatic potential fields; furthermore, it can import GRIDKONT binary files produced by GRID and CoMFA/CoMSIA fields (exported from SYBYL with the aid of a small SPL script). Subsequently, Open3DQSAR performs fast, automated PLS chemometric analysis of MIFs allowing to quickly generate and challenge the predictivity of many 3D-QSAR models using different training/test set combinations, superposition schemes, variable selection and data scrambling procedures, etc.

  • Publisher: Paolo Tosco
  • Date: 18-07-2012
  • Size: 1229 KB
  • Platform: WinOther

Open3DQSAR is an open-source tool aimed at pharmacophore exploration by high-throughput chemometric analysis of molecular interaction fields (MIFs). Open3DQSAR can generate steric potential, electron density and MM/QM electrostatic potential fields; furthermore, it can import GRIDKONT binary files produced by GRID and CoMFA/CoMSIA fields (exported from SYBYL with the aid of a small SPL script). Subsequently, Open3DQSAR performs fast, automated PLS chemometric analysis of MIFs allowing to quickly generate and challenge the predictivity of many 3D-QSAR models using different training/test set combinations, superposition schemes, variable selection and data scrambling procedures, etc.

  • Publisher: Paolo Tosco
  • Date: 19-07-2012
  • Size: 1034 KB
  • Platform: WinOther

Open3DALIGN is an open-source software aimed at unsupervised molecular alignment. Open3DALIGN is a command-line tool which is operated by means of a few commands which can be entered interactively from a command prompt, read from a batch script or piped through standard input. If PyMOL is installed on the system while Open3DALIGN is being operated interactively, the setup of alignments can be followed in real time on PyMOL's viewport. A typical workflow could be the following: 1. A dataset is imported as SDF file 2. Optionally, for each compound of the dataset a quenched molecular dynamics (QMD) conformational search is carried out to find the most stable conformers in a user-defined energy range from the global minimum 3.

  • Publisher: Paolo Tosco
  • Date: 07-06-2012
  • Size: 5325 KB
  • Platform: WinOther

Open3DALIGN is an open-source software aimed at unsupervised molecular alignment. Open3DALIGN is a command-line tool which is operated by means of a few commands which can be entered interactively from a command prompt, read from a batch script or piped through standard input. If PyMOL is installed on the system while Open3DALIGN is being operated interactively, the setup of alignments can be followed in real time on PyMOL's viewport. A typical workflow could be the following: 1. A dataset is imported as SDF file 2. Optionally, for each compound of the dataset a quenched molecular dynamics (QMD) conformational search is carried out to find the most stable conformers in a user-defined energy range from the global minimum 3.

  • Publisher: Paolo Tosco
  • Date: 20-08-2012
  • Size: 4198 KB
  • Platform: WinOther

Sdf: Freeware | All

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