Freeware Listing: Enzymes

Enzymes are not, of course, the sole cause of all disease. However, they are responsible for all cellular activity, and for the break-down and elimination of waste and toxic substances. Enzymes are essential to our immune system, which relies almost entirely on enzymes to do its job. The significance of enzymes is obvious when you consider that the immune system is singularly responsible for fighting off all foreign invaders in the body, such as bacteria, viruses, tumours, and harmful chemicals. Research has shown that a weak immune system has far fewer enzymes than a strong one. The key players in our immune system are the white blood cells, or leukocytes, which act as our internal "swat team".

  • Platform: Win2000, WinOther

Enzymes are vital to our health. They are involved in every process of the body. They digest our food break it down, carry it through the intestine walls and into the blood stream, transport it to the muscles, cells, nerves, tissues and glands of the body, and then facilitate it's conversion into new tissue and new cells. Enzymes also break down foreign objects and dispose of decaying matter, they repair tissue and cellular damage, they assist in storing sugar in the liver and muscles. They help to remove waste products through excretion and they aid in the elimination of carbon dioxide from the lungs.

  • Platform: Win2000, WinOther

BioShears is GUI Restriction Enzymes Database Program Programed by C++ using Qt 4 this program is free software; you can redistribute it and/or modify it under the terms of the GNU GENERAL PUBLIC LICENSE with my best regards Osama S Alrawab.

  • Platform: Linux, WinOther

EZMWeb is an open source web-based bioinformation integration and search system. Users can search the integrated enzyme information.It implements the analysis of correlation between different enzymes,gives its visualized results through java applet..

  • Platform: WinOther

Rana, Restriction Analysis Libraries.Rana is written in Python and provides a set of libraries and scripts to work with restriction enzymes and ADN. The aim is to ease the development of molecular biology software for research or education purposes..

  • Platform: Linux, Unix, WinOther

Find restriction enzymes that help differ known homologe DNA sequences (RFLP). Simulate electrophoresis gels. Usefull to investigate the diversity of a population by one of their common genes. Written in perl, uses bioperl modules and the GD library..

  • Platform: Linux, Mac OS X, WinOther

ENZyme KINetics is the study of the chemical reactions that are catalysed by enzymes. In enzyme kinetics the reaction rate is measured and the effects of varying the conditions of the reaction investigated. Studying an enzyme's kinetics in this way can reveal the catalytic mechanism of this enzyme, its role in metabolism, how its activity is controlled, and how a drug or a poison might inhibit the enzyme. Michaelis Menten kinetics approximately describes the kinetics of many enzymes. It is named after Leonor Michaelis and Maud Menten. This kinetic model is relevant to situations where very simple kinetics can be assumed, (i.

  • Platform: Matlab, Scripts

Kinases are an important class of enzymes that are therapeutically relevant for a wide range of indications such as cancer and neurodegenerative diseases.

Given that there are roughly 500 different kinase proteins, selectivity—???and in some cases polypharmacology—is perhaps one of the most important parameters used during lead optimization.

Here the lead compound is subjected to a panel of kinase assays and the results are often projected onto the kinome dendrogram. Such visualizations provide an effective means to evaluate the selectivity profile of lead compounds.

  • Platform: WinOther

JBioWH provides a framework for biological data integration and management which contains a relational schema for biological data integration, a java Application Programming Interface (API) and a powerful Desktop tool. This framework is designed to provide

1. Data warehouse capabilities to integrate and normalize non heterogeneous biological data
2. An extensive desktop tool for a scientist with no programming experience including an advanced SQL editor for scientist with this programming skill, and,
3. A java API to handle the integrated biological data for further development of Bioinformatics tools.

  • Publisher: jBiowh
  • Date:
  • Size: 12800 KB
  • Platform: Windows 7, Windows 8, WinOther, WinVista

REtools, a user friendly and easily customized program to organize any laboratory enzyme stock, brings a software solution that makes restriction enzyme use and reaction condition determination straightforward and efficient. The usually unexplored potential of isoschizomers becomes accessible to all, since REtools proposes all possible enzymes similar to the one(s) chosen by the user. Finally, many of the commonly overlooked subtleties of restriction enzyme work, such as methylation requirement, unusual reaction conditions, as well as the number of flanking bases required for cleavage, are automatically provided by REtools.

  • Publisher: unice.fr
  • Date:
  • Size: 5632 KB
  • Platform: WinOther

For restriction site data:
The numbers of nucleotide substitutions per site for pairs of DNA sequences and their standard errors (Nei and Tajima 1983).

For restriction fragment data:
The numbers of nucleotide substitutions per site for pairs of DNA sequences (Nei and Li 1979). If two or more classes of restriction enzymes are used, the average number of nucleotide substitutions is estimated by the following weighted average of estimates from individual enzymes.
doTA mk dk
d = ---------,
doTA mk
where mk and dk is the average number of restriction fragments and the number of nucleotide substitutions estimated for the k-th class of restriction enzymes, respectively.

  • Platform: WinOther

Forex Fibonacci Levels is a Freeware offline Fibonacci levels calculator. Leonardo Fibonacci (1170 - 1250) was a Middle Ages mathematician born in the Italian city of Pisa. He is most known with his "Book of Calculation" and the number sequence named Fibonacci Numbers. In the Fibonacci sequence of numbers, each number after the first two is the sum of the previous two numbers. Thus the sequence is 0, 1, 1, 2, 3, 5, 8, 13, 21, 34, 55, 89, 144, 233, etc. Fibonacci ratios derived from this sequence of numbers are 0.382, 0.50, 0.618, 1.27 etc. It is amazing how prevalent these numbers and proportions are in nature and man made structures.

  • Platform: Win2000, Windows Server, Windows Vista, WinOther

The raw food diet weight loss program is based on the consumption of unprocessed and uncooked foods, preferably organic, whole plant-based foods. Benefits of The Raw Food Diet: boosting energy levels,improving the appearance of the skin,reducing the risk of heart disease, improving digestion, lowering weight.Because it contains little to no saturated fat, little salt, and is high in fiber and potassium, the raw food diet has been associated with lowered cholesterol and lowering the risk of some cancers, as well as diabetes. Critics of raw food diets also state that it doesn?t matter if food is heated.

  • Platform: Win2000, WinOther

High-fiber diets are also beneficial for certain gastrointestinal conditions. Fiber slows the movement of food and acidic fluid from the stomach to the intestines. It may help people with duodenal ulcers by reducing the exposure of the small intestine to stomach acids. Get your digestive system back on track: It's a good idea to take digestive plant enzymes with every meal. This will help gas and bloating, as well as to help bowel movements become more frequent. Another technique is to take hydrochloric acid supplements with meals. These will help to alleviate digestive problems. And again, don't dilute your stomach acid or enzymes by drinking liquids during your meal.

  • Platform: Win2000, WinOther

Unipro UGENE is a free visual software solution for DNA and protein sequence analysis. UGENE provides customizable tools for visualization, analysis, annotation of genetic sequences. Features: Integrated tools Multiple sequence alignment using MUSCLE 3, KAlign, Clustal; HMM profiles build and search, based on the source of HMMER 2 and HMMER 3; PCR Primers design using Primer 3; Cloning in silico capabilities; Queries to NCBI BLAST and CDD databases; Protein secondary structure prediction using GOR IV and PSIPRED; Phylogenetic analysis with Phylip; Search for restriction enzymes and integration with REBASE; Extremely fast repeat finder; DNA short reads to reference alignment using Bowtie; De novo assembly with CAP3; Search for transcription factor binding sites using SITECON; Protein back translation; ORF finder;...

  • Publisher: Unipro
  • Date: 19-11-2012
  • Size: 19753 KB
  • Platform: WinOther

ApE was developed to be a small, easy to use plasmid editor. Creates graphic restriction maps- linear or circular with features indicated. Connects graphic and text features with hyperlink double click. Saves graphics as encapsulated postscript or scalable vector graphics. Copy and save graphics as Windows metafiles (MS Windows only). Selects sites matching multiple criteria (union/intersection- cut frequency, site type) in all open windows. Selects sites that cut more often in one sequence than another (for snip-SNP detection or diagnostic digests). Has user defined enzyme grouping to distiguish eg.

  • Platform: WinOther

This project is A Mitochondrial OxydoReduction Simulation System. It consists of two linked projects: a program for displaying and analysing large biomolecular systems (Floral) and a multi-agent simulator for biomolecular oxydoreduction systems (AMORSS)..

  • Platform: Linux, Mac OS X, WinOther

"Plasmidb" is a database management system (RDMS) used to manipulate, view and store molecular biology information rapidly and easily. Editable information includes: constructed plasmids, clones, standard vectors, primers, antibiotics, enzymes and more.

  • Platform: Linux, Mac OS X, WinOther

JBioWH Desktop Client provides users with a relational schema for biological data integration and management.

The application integrates the most important and interesting biologic data sources into a database and allows you to view the name, the URL address and status.

JBioWH (Java Biological Warehouse) Desktop Client includes features such as a SQL Editor, data warehouse capabilities and a Java API designed. The application is designed to integrate and handle biological data for further development.

The database you need to connect to includes data source types such as Taxonomy, Ontology, Gene, Enzymes, Metabolites, Reactions, Diseases and much more.

  • Platform: Windows 7, Windows 8, WinOther, WinVista

Medicinal Chemistry: Cell Wall Synthesis Inhibition was developed as a medical quiz that allows you to learn more about drug action and acid / alkaline stability.

Medicinal Chemistry: Cell Wall Synthesis Inhibition is built with the help of the Java programming language and can also be used to help you learn new things about penicillin and enzymes.


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  • Platform: WinOther

Enzymes: Freeware | All

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