Software Listing: Amino Acids

Having trouble remembering the one letter, three letter amino acid names? How about the polarity? Use this App as a quick reference to learn..

  • Platform: Android 4.x
  • BATE
  • License: Shareware
  • Price: 40
  • Rating

BATE calculates pH of solutions containing mixtures of acid and base with up to 4 dissociation steps and titration curves for these acids and bases. Ionic strentgh can be calculated from the dissociated forms concentrations, omitted or forced upon the solution. Program contains editable database of common weak acids and bases and accepts acid and base dissociation constants and protonation constants as input, calculating all other types of constants as needed. Built in calculator allows easy calculation of molar masses and concentrations for a given substance formula. Printouts describing equlibrium contain information of concentrations and activties of all ions present in the solution, together with activity coefficients (if applicable).

  • Platform: Win2000, Windows Server, WinOther

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  • Platform: Win2000, WinOther

BATE calculates pH of solutions containing mixtures of acid and base with up to 4 dissociation steps and titration curves for these acids and bases. Ionic strentgh can be calculated from the dissociated forms concentrations, omitted or forced upon the solution. Program contains editable database of common weak acids and bases and accepts acid and base dissociation constants and protonation constants as input, calculating all other types of constants as needed. Built in calculator allows easy calculation of molar masses and concentrations for a given substance formula. Printouts describing equlibrium contain information of concentrations and activties of all ions present in the solution, together with activity coefficients (if applicable).

  • Platform: Win2000, Windows Server, WinOther

Toolkit to examine the topology of a phylogenetic tree, place amino acid substitutions on specific branches, polarize them and compare amino acid sequences of homologous proteins to answer a wide range of questions about protein evolution..

  • Platform: Linux, Mac OS X, WinOther
  • ATGC
  • License: Freeware
  • Price: 0.00
  • Rating

ATGC is an application containing a pack of useful algorithms in user-friendly interface for aligning nucleotide sequences, searching consensus and restriction sites, predicting amino acid sequence, docking contigs and so on..

  • Platform: WinOther
  • BASILISK
  • License: Freeware
  • Price: 0.00
  • Rating

BASILISK is a probabilistic model of the conformational space of amino acid side chains in proteins. Unlike rotamer libraries, BASILISK models the chi angles in continuous space, including the influence of the protein's backbone..

  • Platform: Linux, Mac OS X
  • BiasViz
  • License: Freeware
  • Price: 0.00
  • Rating

BiasViz is a Java applet for visualization of amino acid bias in multiple sequence alignments..

  • Platform: Linux, Mac OS X, WinOther

This application transcribes basic codons and tells you the amino acid it codes for, the tRNA anti-Codon, and give you a 3D structural model of the amino acid and 2D picture of its chemical structure. Analysis reports can then be printed by the user..

  • Platform: WinOther
  • CodonW
  • License: Freeware
  • Price: 0.00
  • Rating

CodonW is a programme designed to simplify the Multivariate analysis (correspondence analysis) of codon and amino acid usage. It was written in ANSI compliant C. See the README file for more information..

  • Platform: Linux, Mac OS X, Unix, WinOther
  • iso2l
  • License: Freeware
  • Price: 0.00
  • Rating

iso2l (E?aisEâ„¢utuE?l, spoken isotool) is a software to calculate the isotopic distribution of a chemical formula or a amino acid chain..

  • Platform: Linux, Mac OS X, WinOther

MatrixGen is a Bioinformatics application used to generate scoring matrices from analysis of aligned Amino Acid and DNA data sets. These matrices can then be used by Clustal to generate more accurate alignments. Based upon the Henikoff BLOSUM method..

  • Platform: Linux, Mac OS X, Unix, WinOther

Molevolve is a Java library for running a Genetic Algorithm to model the 3-dimensional structures of peptide chains from amino-acid sequences. Client code can specify its own peptide chain model, fitness functions and GA operations. Requires JDK 1.5..

  • Platform: Linux, Mac OS X, WinOther

Basic implementation of K-nearest neighbour Algorithm and the application of KNN to classify protein sequences as transmembrane beta barrel or non-transmembrane beta barrel on the basis of whole sequence amino acid composition given as input..

  • Platform: Linux

A Mass Spectrometer B and Y ion labeling software for proteomics researchers. Peptide sequences can be read from a library and b and y ions will be calculated and sequence can be manipulated by the user (chem. mod. or amino acid mod.).

  • Platform: Linux, Mac OS X, WinOther

PseAAC-Builder is a cross-platform stand-alone program for generating protein pseudo-amino acid compositions. This is a bioinformatics program. It performs faster than the existing PseAAC server..

  • Platform: WinOther
  • RasTop
  • License: Freeware
  • Price: 0.00
  • Rating

RasTop is a molecular graphics program intended for the visualisation of proteins, nucleic acids and small molecules based on the popular Rasmol software. The program is aimed at the rapid visualization and analysis of molecules..

  • Platform: WinOther

Our software can test for HLA allele and amino-acid differences between two populations. It examines zygosity, tests for strongest association, interaction & linkage disequilibrium among amino acid epitopes..

  • Platform: WinOther

tacg - a fast cmd line app in ANSI C for pattern matching and analysis of nucleic acids and protein..

  • Platform: Linux, Unix

A tool to acquire the amino acid sequences of the essential genes available at the database of essential genes at DEG (http://tubic.tju.edu.cn/deg/) and convert it to fasta sequence.
OpenDEGParser License - GNU General Public License (GPL).

  • Platform: WinOther

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