Software Listing: Amino Acid

Multifunctional Biochemistry Software Package Integrated With: Amino Acid Analysis, Building Block Composition, Digestion, Elemental Analysis, Fragmentation, Isotopic Distribution, Combinatorial Library, Molecular Weight, Motif, and Helix Wheel/Net..

  • Platform: Win2000, Win7 x32, Win7 x64, WinOther, WinVista, WinVista x64

GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more. It is free software under GPLv2+. Requested Features: - Import of Vector NTI Database/Data - Export of Map as Vector Graphic - Edit and move around Plasmid Map Layout - Allow storage in database of complete sequencing files (if space is a concern maybe an upper limit of 2 sequences for each clone would suffice) - Add sections in the database to allow record of box storage position of clone's DNA, glycerol stock, primers - Allow closing of files with Ctrl-W - Clicking a region in the vector map should take the cursor to that region in the sequence viewer.

  • Platform: WinOther

Ever got confused while remembering all the various physical properties of all the standard 20 amino acids? Then use Amino Acid Finder!! It has a built-in database and contains information about all the physical properties and lets you to search them.

  • Platform: Linux, Mac OS X, WinOther

PutGaps is a simple command line utility designed to insert gaps into DNA alignment files by using the amino acid equivalent. The program can be used for conserving codon positions into aligned nucleotide and amino acid files.

You can use the program in the console in order to view the available commands and enter the operation arguments.


.

  • Platform: WinOther

Pseudo amino acid composition or PseAAC, is designed as an accessible and Open Source algorithm that could convert a protein sequence into a digital vector that could be processed by pattern recognition algorithms.

The design of PseAAC Builder incorporated the sequence order information to improve the conventional amino acid compositions.

The application of pseudo amino acid composition is very common, including almost every branch of computational proteomics.

You can now use the cross-platform PseAAC-Builder tool for generating protein pseudo-amino acid compositions.

  • Platform: WinOther

The Protein Stability program was developed to help you explore and analyze the energy requirements of each amino acid in the protein sequence derived from various applied kinetic and thermodynamic quantities.

The algorithm is strongly dependent both on kinetic quantities such as atomic solvation energies and solvent accessible surface area and thermodynamic quantities viz. enthalpy, entropy, heat capacity, etc.

The hydrophobicity pattern of protein was considered as the important component of protein stabilization.

Protein stability, the most important aspect of molecular dynamics and simulations, requires sophisticated instrumentations of molecular biology to analyze its kinetic and thermodynamic background.

  • Platform: WinOther

Having trouble remembering the one letter, three letter amino acid names? How about the polarity? Use this App as a quick reference to learn..

  • Platform: Android 4.x
  • Simprot
  • License: Freeware
  • Price: 0.00
  • Rating

Simprot allows for several models of amino acid substitution (PAM, JTT
and PMB), allows for gamma distributed sites rates according to Yang's model, and implements a
parameterised Qian and Goldstein distribution model for insertion and deletion..

  • Platform: WinOther

Toolkit to examine the topology of a phylogenetic tree, place amino acid substitutions on specific branches, polarize them and compare amino acid sequences of homologous proteins to answer a wide range of questions about protein evolution..

  • Platform: Linux, Mac OS X, WinOther
  • ATGC
  • License: Freeware
  • Price: 0.00
  • Rating

ATGC is an application containing a pack of useful algorithms in user-friendly interface for aligning nucleotide sequences, searching consensus and restriction sites, predicting amino acid sequence, docking contigs and so on..

  • Platform: WinOther
  • BASILISK
  • License: Freeware
  • Price: 0.00
  • Rating

BASILISK is a probabilistic model of the conformational space of amino acid side chains in proteins. Unlike rotamer libraries, BASILISK models the chi angles in continuous space, including the influence of the protein's backbone..

  • Platform: Linux, Mac OS X
  • BiasViz
  • License: Freeware
  • Price: 0.00
  • Rating

BiasViz is a Java applet for visualization of amino acid bias in multiple sequence alignments..

  • Platform: Linux, Mac OS X, WinOther

This application transcribes basic codons and tells you the amino acid it codes for, the tRNA anti-Codon, and give you a 3D structural model of the amino acid and 2D picture of its chemical structure. Analysis reports can then be printed by the user..

  • Platform: WinOther
  • CodonW
  • License: Freeware
  • Price: 0.00
  • Rating

CodonW is a programme designed to simplify the Multivariate analysis (correspondence analysis) of codon and amino acid usage. It was written in ANSI compliant C. See the README file for more information..

  • Platform: Linux, Mac OS X, Unix, WinOther
  • iso2l
  • License: Freeware
  • Price: 0.00
  • Rating

iso2l (E?aisEâ„¢utuE?l, spoken isotool) is a software to calculate the isotopic distribution of a chemical formula or a amino acid chain..

  • Platform: Linux, Mac OS X, WinOther

MatrixGen is a Bioinformatics application used to generate scoring matrices from analysis of aligned Amino Acid and DNA data sets. These matrices can then be used by Clustal to generate more accurate alignments. Based upon the Henikoff BLOSUM method..

  • Platform: Linux, Mac OS X, Unix, WinOther

Molevolve is a Java library for running a Genetic Algorithm to model the 3-dimensional structures of peptide chains from amino-acid sequences. Client code can specify its own peptide chain model, fitness functions and GA operations. Requires JDK 1.5..

  • Platform: Linux, Mac OS X, WinOther

Basic implementation of K-nearest neighbour Algorithm and the application of KNN to classify protein sequences as transmembrane beta barrel or non-transmembrane beta barrel on the basis of whole sequence amino acid composition given as input..

  • Platform: Linux

A Mass Spectrometer B and Y ion labeling software for proteomics researchers. Peptide sequences can be read from a library and b and y ions will be calculated and sequence can be manipulated by the user (chem. mod. or amino acid mod.).

  • Platform: Linux, Mac OS X, WinOther

PseAAC-Builder is a cross-platform stand-alone program for generating protein pseudo-amino acid compositions. This is a bioinformatics program. It performs faster than the existing PseAAC server..

  • Platform: WinOther

Page: 1 | 2 | 3 | 4 | 5 | Freeware

New Reviews


My Paint

Do you own an android phone? Do you find It annoying how there is no visual note storing app (or indeed, any app for storing notes or writing important things down at all)? My paint is a handy downloadable app for the android operating system that ...


Skies of War

Skies of war is a top down plane shooter free ware game which really does reinvent the concept, and add a great deal to it. In skies of war you are a plane tasked with destroying a vast number of bases, enemy units and enemy planes. As you play ...


Kaspersky Internet Security

With increasing use of Internet, there is increase in rate of transfer of malware and therefore more threat to your Computer. Security is an essential part of anything, be it your life or be it your PC. If your Personal Computer isn’t secure, ...


KinderGarten

Kindergarten is a free ware baby care game / attempt at a day care simulation. In kindergarten, you are a woman running a day care (or as the title seems to suggest, a kindergarten) as lots of children are dropped off at the day care by their ...


FILExtinguisher

FILExtinguisher is a simplistic looking data removal tool, that will assist you in totally and completely removing sensitive data from your computer hard drive. This means that you can securely remove your online surfing history, banking details, ...


Fraps

Fraps is a video capture utility specifically designed for the recording of other pieces of software, specifically tailoured to those which use direct X and open GL. This means the main use of fraps is for recording games which run on the windows ...


Audacity

Audacity is one of the few free audio recording programs out there, which is great for people like me who need to record audio on a regular basis. Audacity is more than just  the simple “microphone to MP3” software that many will ...


Jewel Quest 3 Game

Jewel quest (3) is a free ware downloadable game from Free Ride games, a game development studio with a fair number of high quality games on this website. Jewel quest isn't an exception to this rule. Jewel quest is essentially a clone of the ...


Arkout 3D Deluxe

Arkout 3d deluxe (or as we'll say from here on, simply arkout 3d) is a three dimensional re imagining of the classic concept of arcanoid, also known as brick or breakout. In the original arcanoid game, the aim is the move your baton across the ...



New Downloads

Vrode Script Editor

Vrode Script Editor is an
easy-to-use, lightweight and
effective editor for
JavaScript, Python, VBScript,
HTML and CSS ...

TeeChart NET for
Xamarin.Android

TeeChart Charting component
for Xamarin.Android offers the
most common chart types,
gauges and maps with
customizable ...

LeoFetch

LeoFetch is application for
automatic Internet browsing
with the options to download
web pages, collect web-links,
...

USB Flash Security

\'USB Flash Security\' is
security software that
protects data in a USB Flash
Drive by a password. It locks
by the ...

Auto Straightener

Auto Straightener can detect
skewed texts and images in
scanned documents, and output
a straightened version.

Multimedia Xpert

Convert, extract, split,
concatenate, join, shift
audio, burn in text or images,
scan for defects, repair and
display ...

Tipard Mac DVD Ripper
Platinum

Tipard Mac DVD Ripper Platinum
can rip DVD on Mac to all
popular video formats, such as
MP4, MOV, M4V, MKV, AVI, WMV,
TS, ...

UNFORMAT

Unformat is a data recovery
software designed to help
users unformat hard drive
partitions and recover data
from any ...

Gihosoft Mobile Transfer

Transfer almost all files,
including contacts, videos,
SMS, photos, call logs, music,
calendar etc between phones.
...



Related Searches

Amino Synt Acid
Wav Free Acid
Download Acid
Screen Acid
Free Loop Acid
Software S Acid
Free Cell Acid
Software Acid
Pro Acid
Wav Midi Acid
Midi Music Acid
Sonic Foun Acid