TFM-Explorer
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TFM-Explorer (Transcription Factor Matrix Explorer) is a program for analysing regulatory regions of eukaryotic genomes.
It takes a set of coregulated gene sequences, and search for locally overrepresented transcription factor biding sites.
The algorithm proceeds in two steps:
scans sequences for detecting all potential transcription factor binding sites, using weight matrices from JASPAR or TRANSFAC (disclaimer)
extracts significant clusters (region of the input sequences associated with a factor) by calculated a score function
TFM-Explorer allows also to visualize the result clusters and their putative transcription factor biding sites on the input sequences, and to search for cis-regulatory modules.
Free download from Shareware Connection - TFM-Explorer (Transcription Factor Matrix Explorer) is a program for analysing regulatory regions of eukaryotic genomes.
Version: 2.0 | Size: 11571 KB | Platform: WinOther
Released Date: | Rating: 0 | Title: TFM-Explorer
Author Url: http://bioinfo.lifl.fr/RNA/carnac
Program Info Url: http://bioinfo.lifl.fr/RNA/carnac
Download Url: http://bioinfo.lifl.fr/TFM/TFME/TFM_Explorer_2.0.zip
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Shareware Connection periodically updates pricing and software information of 'TFM-Explorer' from company source 'Bonsai Bioinformatics group' , so some information may be slightly out-of-date. You should confirm all information before relying on it. Software piracy is theft, Using 'TFM-Explorer' crack, password, serial numbers, registration codes, key generators is illegal and prevent future development of TFM-Explorer.
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