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Swift Sequence Alignment Program

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Swift is a DNA sequence alignment program that produces gapped alignment using the Smith-Waterman algorithm. It takes in a query file (FASTA format) and a reference file (FASTA format) as input. It outputs the reference name, read name, gapped alignment, alignment score, alignment start and end positions, and alignment length.

I gave a talk on Swift in the GPU Technology Conference 2012. The talk can be accessed at http://www.gputechconf.com/gtcnew/on-demand-GTC.php?sessionTopic=58&searchByKeyword=&submit=&select=+&sessionEvent=&sessionYear=&sessionFormat=#1303.

To install and run Swift, please refer to the Wiki page: http://sourceforge.net/p/swiftseqaligner/wiki/Home/

If you need further help installing or running Swift, please contact Pankaj Gupta at pankaj.gupta@stjude.org.

Produces gapped alignment using Smith-Waterman algorithm, Smith-Waterman algorithm runs on the GPU (Graphics Processing Unit), Accepts a read file (FASTA format) and a reference file (FASTA format) as inputs, Outputs reference name, read name, gapped alignment, alignment score, alignment start and end positions, and alignment length, Supports Illumina reads (fixed length), Requirements: Linux OS; 4 GB system memory; CUDA capable graphics card; CUDA toolkit 4.2+; 6 GB global memory; 49 KB shared memory

Swift Sequence Alignment Program License - GNU General Public License version 2.0 (GPLv2)

Free download from Shareware Connection - Swift is a DNA sequence alignment program that produces gapped alignment using the Smith-Waterman algorithm.

Publisher: Swiftseqaligner | License: Freeware | Price: 0.00
Version: 0.11.2 | Size: 466 KB | Platform: Linux
Released Date: | Rating: 0 | Title: Swift Sequence Alignment Program

Author Url: http://sourceforge.net/projects/swiftseqaligner
Program Info Url: http://sourceforge.net/projects/swiftseqaligner
Download Url: http://sourceforge.net/projects/swiftseqaligner/files/latest/download?source=directory
Screenshot Url: http://sourceforge.net/projects/swiftseqaligner/screenshots/Screenshot-1.png

Swift Sequence Alignment Program related downloads:

Sequence Alignment Program - Bioinformatics program for analysing two (currently) or more (in the future) protein sequences and compare them using a Smith-Waterman and/or Needleman-Wunsch algorithms.

MUMmerGPU - MUMmerGPU is a high-throughput DNA sequence alignment program that runs on nVidia G80-class GPUs. It aligns sequences in parallel on the video card to accelerate the widely used serial CPU program MUMmer.

Zoomable Sequence Alignment Editor - ZAE is a Zoomable multiple sequence Alignment Editor

SW# - SW# provides you with a lightweight library that can perform sequence alignment on CUDA enabled GPUs.

MAFFT - MAFFT was developed as a small, easy-to-use and Command Line-based multiple sequence alignment application.

Shareware Connection periodically updates pricing and software information of 'Swift Sequence Alignment Program' from company source 'Swiftseqaligner' , so some information may be slightly out-of-date. You should confirm all information before relying on it. Software piracy is theft,  Using 'Swift Sequence Alignment Program' crack, password, serial numbers, registration codes, key generators is illegal and prevent future development of Swift Sequence Alignment Program.

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