Software Downloads for "Amino Synt Acid"

Related: Wav Free Acid - Download Acid - Screen Acid - Free Loop Acid - Software S Acid

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Multifunctional Biochemistry Software Package Integrated With: Amino Acid Analysis, Building Block Composition, Digestion, Elemental Analysis, Fragmentation, Isotopic Distribution, Combinatorial Library, Molecular Weight, Motif, and Helix Wheel/Net..

GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more. It is free software under GPLv2+. Requested Features: - Import of Vector NTI Database/Data - Export of Map as Vector Graphic - Edit and move around Plasmid Map Layout - Allow storage in database of complete sequencing files (if space is a concern maybe an upper limit of 2 sequences for each clone would suffice) - Add sections in the database to allow record of box storage position of clone's DNA, glycerol stock, primers - Allow closing of files with Ctrl-W - Clicking a region in the vector map should take the cursor to that region in the sequence viewer.

  • Platform: WinOther
  • Publisher: Magnus Manske
  • Date: 26-09-2012
  • Size: 2765 KB

Ever got confused while remembering all the various physical properties of all the standard 20 amino acids? Then use Amino Acid Finder!! It has a built-in database and contains information about all the physical properties and lets you to search them.

PutGaps is a simple command line utility designed to insert gaps into DNA alignment files by using the amino acid equivalent. The program can be used for conserving codon positions into aligned nucleotide and amino acid files.

You can use the program in the console in order to view the available commands and enter the operation arguments.


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Pseudo amino acid composition or PseAAC, is designed as an accessible and Open Source algorithm that could convert a protein sequence into a digital vector that could be processed by pattern recognition algorithms.

The design of PseAAC Builder incorporated the sequence order information to improve the conventional amino acid compositions.

The application of pseudo amino acid composition is very common, including almost every branch of computational proteomics.

You can now use the cross-platform PseAAC-Builder tool for generating protein pseudo-amino acid compositions.

  • Platform: WinOther
  • Publisher: Pufeng Du
  • Date:

The Protein Stability program was developed to help you explore and analyze the energy requirements of each amino acid in the protein sequence derived from various applied kinetic and thermodynamic quantities.

The algorithm is strongly dependent both on kinetic quantities such as atomic solvation energies and solvent accessible surface area and thermodynamic quantities viz. enthalpy, entropy, heat capacity, etc.

The hydrophobicity pattern of protein was considered as the important component of protein stabilization.

Having trouble remembering the one letter, three letter amino acid names? How about the polarity? Use this App as a quick reference to learn..

  • Platform: Android 4.x
  • Publisher: DiscoverBits
  • Date: 14-03-2015
  • Size: 267 KB

Simprot allows for several models of amino acid substitution (PAM, JTT
and PMB), allows for gamma distributed sites rates according to Yang's model, and implements a
parameterised Qian and Goldstein distribution model for insertion and deletion..

  • Platform: WinOther
  • Publisher: Paulo Nuin
  • Date:
  • Size: 5816 KB

A pH Calculator, a Virtual Titrator, a Real Titration Data Analyzer, a Distribution Diagram Generator - that's CurTiPot, the all-in-one freeware to learn, teach and work with chemical equilibrium of acids, bases, salts and buffers at home, classroom, interactive "dry lab" or research laboratory. Features of this powerful suite of MS Excel spreadsheets embrace: - pH calculation of any aqueous solution of strong and weak acids, bases, salts, buffers and mixtures of up to 7 polyprotic systems (>40 species), with activity coefficient estimation; - Simulation and overlay of acid-base titration curves of any complexity, with or without random errors in pH and/or volume.

ChemToolBox, the swiss army knife of the lab worker, is a freeware which contains numerous scientific data very useful in a laboratory. Thanks to its own database, ChemToolBox will easily substitute to the time-consuming use of scientific books (such as Handbooks) or online databases.
ChemToolBox is a freeware desitinated to a broad audience (any level students, Ph.D. or even senior scientists) and will be a precious help in various fields such as organic chemistry (properties of solvents, miscibility and polarity, cooling mixtures), solution chemistry (acid/base and RedOx couples, colored indicators, complexes, salts, fluorochroms), spectroscopy (1H and 13C NMR) or polymer chemistry), biochemistry (amino acids, nitrogen bases, carbohydrates, fatty acids, SDS-PAGE), etc.

  • Platform: Windows
  • Publisher: Julien Nicolas
  • Date: 18-04-2011
  • Size: 11407 KB

Toolkit to examine the topology of a phylogenetic tree, place amino acid substitutions on specific branches, polarize them and compare amino acid sequences of homologous proteins to answer a wide range of questions about protein evolution..

  • ATGC
  • License: Freeware
  • Rating

ATGC is an application containing a pack of useful algorithms in user-friendly interface for aligning nucleotide sequences, searching consensus and restriction sites, predicting amino acid sequence, docking contigs and so on..

BASILISK is a probabilistic model of the conformational space of amino acid side chains in proteins. Unlike rotamer libraries, BASILISK models the chi angles in continuous space, including the influence of the protein's backbone..

BiasViz is a Java applet for visualization of amino acid bias in multiple sequence alignments..

This application transcribes basic codons and tells you the amino acid it codes for, the tRNA anti-Codon, and give you a 3D structural model of the amino acid and 2D picture of its chemical structure. Analysis reports can then be printed by the user..

CodonW is a programme designed to simplify the Multivariate analysis (correspondence analysis) of codon and amino acid usage. It was written in ANSI compliant C. See the README file for more information..

  • iso2l
  • License: Freeware
  • Rating

iso2l (E?aisEâ„¢utuE?l, spoken isotool) is a software to calculate the isotopic distribution of a chemical formula or a amino acid chain..

  • Platform: Linux, Mac, Windows
  • Publisher: blog.binfalse.de
  • Date: 03-06-2012
  • Size: 60 KB

MatrixGen is a Bioinformatics application used to generate scoring matrices from analysis of aligned Amino Acid and DNA data sets. These matrices can then be used by Clustal to generate more accurate alignments. Based upon the Henikoff BLOSUM method..

Molevolve is a Java library for running a Genetic Algorithm to model the 3-dimensional structures of peptide chains from amino-acid sequences. Client code can specify its own peptide chain model, fitness functions and GA operations. Requires JDK 1.5..

  • Platform: Linux, Mac, Windows
  • Publisher: cyberdemia.com
  • Date: 18-09-2012
  • Size: 2029 KB

Basic implementation of K-nearest neighbour Algorithm and the application of KNN to classify protein sequences as transmembrane beta barrel or non-transmembrane beta barrel on the basis of whole sequence amino acid composition given as input..

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