Home > By category > Education >Science > Pysimony



Pysimony

  • Downloads: 
  • Views: 
  • Rating:

UPDATE: After some bug fixes, I've ditched Pysimony for Javamony: https://sourceforge.net/projects/javamony/

Given Python's beauty, I know that someday I will have to finish Pysimony.

A student's first attempt at a phylogenetic inference program, written in the simplistic yet elegant Python.

Pysimony reads a FASTA file (only ATGC accepted) specified as its only argument. Basic testing has shown that it is slow, inaccurate and most definitely inefficient. An unlikely-to-be-the-most-parsimonious tree is printed upon completion in basic Newick tree format.

As all parts of the program are the original work of a beginner programmer, this may represent one of the worst approaches to solving the phylogenetic problem. I have clearly avoided object-oriented programming.

Nevertheless, I distribute this imagining it might someday be slightly educational or at least provide a laugh at the pathetic attempt it makes to reinvent the wheel

Flawed parsimony calculator, Reads FASTA files (only ATGC), Outputs tree in Newick format, Simple, single mode

Pysimony License - GNU General Public License version 3.0 (GPLv3)

Free download from Shareware Connection - UPDATE: After some bug fixes, I've ditched Pysimony for Javamony: https://sourceforge.

Publisher: Pysimony | License: Freeware | Price: 0.00
Version: 1.0 | Size: 6 KB | Platform: Linux, Mac OS X, WinOther
Released Date: | Rating: 0 | Title: Pysimony

Author Url: http://sourceforge.net/projects/pysimony
Program Info Url: http://sourceforge.net/projects/pysimony
Download Url: http://sourceforge.net/projects/pysimony/files/latest/download?source=directory

Pysimony related downloads:

Javamony - Based on the not-so-successful Pysimony (https://sourceforge.

Shareware Connection periodically updates pricing and software information of 'Pysimony' from company source 'Pysimony' , so some information may be slightly out-of-date. You should confirm all information before relying on it. Software piracy is theft,  Using 'Pysimony' crack, password, serial numbers, registration codes, key generators is illegal and prevent future development of Pysimony.

New Reviews

Trend Micro HouseCall - With time, PC users find it increasingly difficult to keep their systems free of malware and rogue apps, despite using latest and feature packed security software. This is mostly owing to the evolving nature of malware and newer types of ...

PCFerret - For average PC users learning about the details of each hardware component used in the laptop or desktop may not be an easy task. It is something the geeks can find out easily. However, less tech savvy PC users can surely resort to specialized ...

Plants vs. Zombies 2 - These days there are lot of tower defense games on offer. Coming from the stable of Electronics Arts, which is one of the leading companies in the gaming arena, Plant vs. Zombies is a decent game particularly if you are interested in garden ...

Qustodio Free Parental Control - Without using the Internet, it is extremely difficult to obtain information, seek entertainment or look for study references but there is a downside to it as well. While some tech savvy kids master the tricks to bypass monitoring of their parents ...

DriveHQ Online Backup Enterprise Edition - For individual users as well as organizations, taking backup of data is vital nowadays. You really cannot count on the PC hard drive solely to store your data forever in a secure manner, as it is! Backup software is a prerequisite and choosing ...

LastPass - Nearly every computer and internet users need to deal with a lot of passwords and this number only goes up with time! Remembering so many passwords becomes tedious with time and that can add to inconvenience. While you can assign the task of ...

Portable SMPlayer - Using media player software is something PC users are not alien to, as it is. Even the most workaholic users indulge in listening to music tracks at times. While the WMP, which comes with Windows, may serve needs for some users, it is not ...

UltraMixer Free Edition - Sound Mixing and is a sought after profession and creating your own mix is considered to be pretty cool. With Sound Mixing profession, also known as DJing, comes the need of certain software programs which help hugely while in this profession. ...

Emsisoft Emergency Kit - The way malware creators and hackers are adapting to newer measures to sneak past PC security, it is no longer enough to stay complacent after installing a standalone antivirus. You never know when a stealthy malware sneaks past its scan and ...

Norton Power Eraser - Getting rid of malware and other types of rogue applicationlications with a regular antivirus can prove to be a tough task nowadays. The way malicious users are becoming smarter with time; it makes sense to use an additional layer of protection ...




New Downloads

Analysis Center

This sophisticated piece of
software turns your computer
into a modern,
State-of-The-Art spectrum
analyzer giving you ...

DeutschlandQuiz

Gewusst Was: *Unterwegs in
Deutschland*Der ReisespaAY als
Quiz fA?r Windows 8
Phone!Lernen Sie mit dieser
App Deutschland ...

alphabet training

An animal is displayed, trains
bring along alphabets and user
has to tap on the letters used
in the animal's name, ...

Alphabet Sub

In this (ad supported trial)
version of "Alphabet Sub" help
pilot a toy submarine around
while collecting letter/number
...

Dream Bubble

Easy! Funny! Addictive bubble
game!Once you pop, you can't
stop!

OBDM Radio

This is the most convenient
and reliable way to access Our
Big Dumb Mouth. You're always
connected to the latest
episode. ...

Medved Radio

Get your daily dose of debate
from Michael Medved!-Stream
the radio show 24x7 hours a
day (live at 12pm to 3pm ...

JavaForGeeks

Java is a programming language
originally developed by James
Gosling at Sun Microsystems
(which has since merged into
...

EMT flashcards

EMT flashcards to help you
prepare for EMT exam. Make
your EMT preparation fun with
games including matching,
memorize ...

AirReport Pro - METAR & TAF

View up-to-date METAR and TAF
aviation weather from NOAA in
a user friendly dashboard.
View raw or decoded using
metric ...

Pop Star 2

*Once you pop, you can't
stop!And you will know you
IQ.*IQ Star is a very
interesting game on iPhone and
now it is ...

Spieltelefon

Telefonieren wie die GroAYen
und dabei spielend die Zahlen
lernen! Super fA?r Kinder im
Alter von 3 bis 5.