Pysimony
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UPDATE: After some bug fixes, I've ditched Pysimony for Javamony: https://sourceforge.net/projects/javamony/
Given Python's beauty, I know that someday I will have to finish Pysimony.
A student's first attempt at a phylogenetic inference program, written in the simplistic yet elegant Python.
Pysimony reads a FASTA file (only ATGC accepted) specified as its only argument. Basic testing has shown that it is slow, inaccurate and most definitely inefficient. An unlikely-to-be-the-most-parsimonious tree is printed upon completion in basic Newick tree format.
As all parts of the program are the original work of a beginner programmer, this may represent one of the worst approaches to solving the phylogenetic problem. I have clearly avoided object-oriented programming.
Nevertheless, I distribute this imagining it might someday be slightly educational or at least provide a laugh at the pathetic attempt it makes to reinvent the wheel
Flawed parsimony calculator, Reads FASTA files (only ATGC), Outputs tree in Newick format, Simple, single mode
Pysimony License - GNU General Public License version 3.0 (GPLv3)
Free download from Shareware Connection - UPDATE: After some bug fixes, I've ditched Pysimony for Javamony: https://sourceforge.
Version: 1.0 | Size: 6 KB | Platform: Linux, Mac OS X, WinOther
Released Date: | Rating: 0 | Title: Pysimony
Author Url: http://sourceforge.net/projects/pysimony
Program Info Url: http://sourceforge.net/projects/pysimony
Download Url: http://sourceforge.net/projects/pysimony/files/latest/download?source=directory
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Javamony - Based on the not-so-successful Pysimony (https://sourceforge.
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