OrthoRBH
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OrthoRBH is a tool/pipeline designed to identify families of protein coding transcripts/genes in related species using a reciprocal blast method. It can search through databases of full-length cDNAs, ESTs or mRNA-seq data. Optional assembly of candidate sequences allows assembly of contigs. It is suited to handling a mixture of EST and mRNA-seq sequence data. It performs batch blast searches, so it is ideal for large multi-gene families. After collecting candidate sequences, it performs sequence alignment and deposits sequences into a fasta sequence file for downstream molecular evolutionary analysis.
OrthoRBH License - GNU Library or Lesser General Public License version 3.0 (LGPLv3)
Free download from Shareware Connection - OrthoRBH is a tool/pipeline designed to identify families of protein coding transcripts/genes in related species using a reciprocal blast method.
Version: 1.0 | Platform: WinOther
Released Date: | Rating: 0 | Title: OrthoRBH
Author Url: http://sourceforge.net/projects/orthorbh
Program Info Url: http://sourceforge.net/projects/orthorbh
Download Url: http://sourceforge.net/projects/orthorbh
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