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Listing of Science in Education

AGENDA (Application for mining Gene Ontology Data).

  • Platform: Linux, Mac OS X, WinOther

A system based on the multiagent approach,to help the biologists with the manual annotation task on genome sequencingprojects
BioAgents License - GNU General Public License (GPL).

  • Platform: WinOther
  • BioAPI
  • License: Freeware
  • Price: 0.00
  • Rating

A easy to use set of utilities for bioinformatics that work out of the box without having to import or include too many other libraries, these will form a workbench for the everyday work of a bioinformatician.
BioAPI License - GNU Library or Lesser General Public License (LGPL).

  • Publisher: Bioapi
  • Date: 29-05-2013
  • Platform: WinOther
  • BioAS
  • License: Freeware
  • Price: 0.00
  • Rating

Actionscript biological library package. Provides biological object implementation, file parser/IO, and network connection to public biological databases.
BioAS License - GNU General Public License version 2.0 (GPLv2).

  • Publisher: Bioas
  • Date: 14-07-2013
  • Platform: WinOther

Small set of utilities used by the 2010 iGEM Mexico-UNAM-CINVESTAV Team to automate biobricks from files.

  • Platform: Linux, Mac OS X, WinOther

The project would include the development of XUL, CSS and Javascript components to assist biologists in sequence manipulations, data mining, data analysis, etc.).
BioBrowser License - GNU General Public License version 3.0 (GPLv3).

  • Platform: WinOther

BioBuilder was a framework for building protein-centric databases using the Zope2. It's not maintained anymore. If you want to have a look to the latest snapshot of the code you can get it at http://biobuilder.sourceforge.net/ Contact us if you want to
BioBuilder License - MIT License.

  • Platform: WinOther

A web interface to easily retrieve annotation from different microarrays platforms.The annotation is provided by BioConductor. With this tool among others features we can also compare annotation from varius chip types (ie: Agilent ID to Affy ID etc).

  • Platform: Linux

BIOCHAM GUI is a user friendly graphical interface for the software BioCham (http://contraintes.inria.fr/BIOCHAM ). It's easy to use, helps and gives the user richer experience throughout his work. It supports SBML and SBGN specifications.
Working with multiple models at the same time, Simulation results comparison window, Models graphically editable, SBML and ODE import export features, SBGN graphical notation support, Editable plot preview of simulation results, Saving and exporting simulation results to different formats, Powerful and unique methods for fitting and searching parameters, Model reduction operations, Executing Temporal Logic queries over the models
BioCham_Gui License - GNU General Public License (GPL).

  • Platform: WinOther
  • bioCity
  • License: Freeware
  • Price: 0.00
  • Rating

bioCity is a continuous space, discrete time simulation written in C++. It is meant to be of use to population biologists. Rules of behaviour are given to individuals that move, live, die, and procreate..

  • Platform: Linux, Unix

BioCommon is a Java library that provides API for common bioinformatic tasks such as parsing FASTA-, ACE- and BLAST-formatted files, statistically summarizing sequences and translating open reading frames.
BioCommon License - GNU General Public License (GPL).

  • Platform: WinOther

C++ library for protein sequence profile to profile alignment. Implementing numerous known alignment variants in a flexible and manageable architecture..

  • Platform: WinOther

We intend to develop a software platform , which can help biology workers to integrade their own software or web service to this platform . Then with help of the platform , the biology workers could share the convenience and beauty of these softwares.

  • Platform: WinOther

BioCSharp is an open-source project designed to provide a bioinformatics .NET framework for processing biological data. It will include objects for manipulating sequences, file parsers, DAS, database access and analysis and statistical routines.
BioCSharp License - GNU Library or Lesser General Public License (LGPL).

  • Platform: WinOther
  • biodivDP
  • License: Freeware
  • Price: 0.00
  • Rating

biodivDP is a web application that can be used for accumulation and dissemination of, but not limited to, biodiversity and taxonomy specific data..

  • Platform: WinOther

Biodiversity Information Group develops software tools and data standards that enable herbaria and museums to create dynamic distributed queries of their online databases. See http://bit.ly/bfirSh and http://bit.ly/bwpnSY for latest developments..

  • Platform: Linux, Mac OS X, WinOther

Biodiversity Monitoring System is repository for diverse information relating to the monitoring of biodiversity. It will hold data about biology, chemistry, climate, geography, hydrology etc whichmay be useful.
Biodiversity Monitoring System License - GNU General Public License (GPL).

  • Platform: WinOther

This software uses data gathered from published biodiversity inventories, together with physical and vegetational maps, to build a biodiversity map (darkening geographical landscape according with the richness/diversity of species)..

  • Platform: WinOther
  • BioDOM
  • License: Freeware
  • Price: 0.00
  • Rating

BioDOM is a JAVA library for easy creation of XML files according to simple XML schemas for describing biological data. It can also be used to convert other commonly used biological (possibly non-)XML data into these new formats..

  • Platform: Linux, Mac OS X, WinOther

The goal of the BioDotNet project is to produce open-source libraries for computational molecular biology using the Microsoft .NET development platform.The BioDotNet project follows the same phylosophy of its cousins BioPerl and BioPython.
BioDotNet License - GNU Library or Lesser General Public License (LGPL).

  • Platform: WinOther

The BIOE system is an open-hardware platform to bridge the gulf between open-source CACSD systems like Scilab and the physical plant. It is intended for engineers, students, hobbyists, and anyone interested in automation and mechatronic..

  • Platform: Linux, Unix, WinOther

Bioinformatic C++ library providing a central engine to other bio* libraries (BioPerl, BioPython, BioJava).
BioEngine License - GNU General Public License (GPL).

  • Platform: WinOther
  • BioEra
  • License: Freeware
  • Price: 0.00
  • Rating

BioEra is DSP visual designer that can be used to create interfaces between human being and a machine with using bio signals like EEG, QEEG, HEG, EMG, ECG, GSR, EOG, visual/sound entrainment and others..

  • Publisher: bioera.net
  • Date: 20-07-2012
  • Size: 884 KB
  • Platform: Linux, Mac OS X, WinOther
  • BioEval
  • License: Freeware
  • Price: 0.00
  • Rating

BioEval, a web-based evaluation platform for one or multiple biomedical text extraction systems and the collaborative creation of gold standards. Handles evaluation of extraction of one to many related entities, plus supporting evidence and normalization
BioEval License - Academic Free License (AFL).

  • Publisher: Bioeval
  • Date: 25-10-2013
  • Platform: WinOther
  • BioEvent
  • License: Freeware
  • Price: 0.00
  • Rating

This is a Java-based project for complex event extraction from text and co-reference resolution. Currently the code can read BioNLP shared task format (http://2011.bionlp-st.org/) and i2b2 Natural Language Processing for Clinical Data shared task format (https://www.

  • Platform: WinOther
  • BioFace
  • License: Shareware
  • Price: .price.
  • Rating

BioFace is simple software for editing and analyzing DNA, RNA, and protein sequences that is written in Java using SWT and JFace as libraries. Opening GenBank, FASTA, EMBL, or simple sequence files and analizing these sequences can be done..

  • Publisher: Y-S
  • Date: 27-06-2013
  • Size: 5785 KB
  • Platform: Win2000, WinOther
  • BioFlex
  • License: Freeware
  • Price: 0.00
  • Rating

This software provides accession to multiple biological applications and databases at different servers..

  • Platform: WinOther

If you want to post a review, remember that this is only a modification, so comment on my changes, not on the simulation.

Original project by Joan Queralt Molina:
https://sourceforge.net/projects/biogenesis/

Discussion thread:
https://sourceforge.

  • Platform: Linux, Mac OS X, WinOther
  • BioGenie
  • License: Freeware
  • Price: 0.00
  • Rating

Bioinformatics as an emerging research area spreads out many challenges to both the Bioinformaticists and the Bioinformaticians. BioGenie is presented as a complete package for tackling these challenges. Accommodating all three platforms, that is, a desktop application, a web application and a mobile (android-based) application, BioGenie outperforms all existing softwares engineered to assist heavy and complex computations.

  • Publisher: Biogenie
  • Date: 03-08-2013
  • Size: 55723 KB
  • Platform: WinOther

BioGeoTools is a Java based package that is aimed at providing a program and libraries for biogeorgaphy analyses.
BioGeoTools: Biogeography Tools License - GNU General Public License (GPL).

  • Platform: WinOther

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