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HIA

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HIA is a new sequence alignment to align both short and long reads to a reference genome. HIA has two indexes, a hash table index and a suffix array index. The hash table is capable of the direct lookup of a q-gram and the suffix array is very fast in the lookup of a variable length q-gram. Our experiments show that the hybrid of hash table and suffix array is useful at the perspective of speed to map NGS sequencing reads to a reference genome sequence.

Free download from Shareware Connection - HIA is a new sequence alignment to align both short and long reads to a reference genome.

Publisher: Hiahia | License: Freeware | Price: 0.00
Version: 1.0 | Size: 3039 KB | Platform: WinOther
Released Date: | Rating: 0 | Title: HIA

Author Url: http://sourceforge.net/projects/hiahia
Program Info Url: http://sourceforge.net/projects/hiahia
Download Url: http://sourceforge.net/projects/hiahia/files/latest/download?source=directory

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