Freeware Downloads for "Protein Adapter"

Related: Sms Adapter For Vb - Sms Adapter - Hdmi Vg Adapter - Protein Avocado - Adapter Aspi

This contest concerns a very simplified two-dimensional version of the protein folding problem. Given the amino acid sequence of a simplified protein, your job is to determine a final "optimally folded" configuration. Each potential arrangement of the protein sequence is associated with an energy state, or score. An optimal folding (and there may be more than one) corresponds to the configuration with the lowest possible score, which can be thought of as a minimum energy configuration..

DataMapper adapter for RDF storage systems..

  • Platform: Ruby, Scripts
  • Publisher: Arto Bendiken
  • Date: 26-03-2013
  • Size: 10 KB

The Protein Stability program was developed to help you explore and analyze the energy requirements of each amino acid in the protein sequence derived from various applied kinetic and thermodynamic quantities.

The algorithm is strongly dependent both on kinetic quantities such as atomic solvation energies and solvent accessible surface area and thermodynamic quantities viz. enthalpy, entropy, heat capacity, etc.

The hydrophobicity pattern of protein was considered as the important component of protein stabilization.

The Mule EbMS Adapter was developed using the Java programming language in order to extend the Open Source enterprise service bus Mule with support for the ebXML Message Service protocol.

Using ebMS business information can be exchanged in a secure and reliable way. Messages can be digitally signed and sent encrypted. Additionally the succesful receipt of messages can be confirmed by returning an acknowledgment.


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Bio2Midi converts the text of a DNA or protein sequence to a MIDI file, which you may immediately audition, or import into any MIDI sequencer for further compositional processing. Choose to listen to the sequences as 4-note DNA bases, or as 20-note protein amino acids, or both at once. You can select specific data sections to be translated, called exons and introns, and mark areas of interest to be played in a different instrument. In order to provide a fast, easy sketchpad for converting and listening to the sequences Bio2MIDI translations are kept simple, giving only direct pitch translation of the DNA and protein sequences.

V-Clinic Mobile manages your weight, nutrition & fitness on your phone. It manages your intake of all nutrients and vitamins such as fat, protein, calories, sugar, vitamin d etc. It is the only service in the world that lets you send your food data direct to a dietitian for analysis. The dietitian will then put you on a personal nutrition program that you can download straight to your phone every day. He will set daily limits for your nutrient intake. If you exceed these limits, V-Clinic Mobile will warn you.

Data Generator Source Adapter generates random integer (DT_I4) and string (DT_WSTR) data and places them in the pipeline Data Generator Source Adapter will generate random integer (DT_I4) and string (DT_WSTR) data and places them in the pipeline. You specify how many columns of each you would like and for any string columns you pass a fixed length value. You then need to specify how many rows in total you require to be generated. This component is used by us to do testing of the pipeline and components downstream.

  • Platform: WinOther
  • Publisher: sqlis.com
  • Date: 18-9-2009
  • Size: 564 KB

This freeware program visualizes pathways (KEGG, BioCarta, GenMAPP, ...). The user has the possibility to display any kind of quantitative data from gene and protein experiments directly within the pathways (colours represent the value). The linking between the pathway items and the experiment data is done over the gene or protein names and their accession numbers. Furthermore the user has a quick overview on the gene/protein with the collected links in the web-interface (direct links). This program includes only a small part of the functions from the software GENOM 2005.

  • Platform: WinOther
  • Publisher: GSA
  • Date: 12-08-2012
  • Size: 5140 KB

The program consgen takes multiple protein structures in PDB format and aligns them using a modified Procrustes method that aims to maximize residue similarity. The principal result is a consensus structure showing residue conservation..

composite services self-adapter oriented environment-aware system V1.0.

The JCA 1.5 compliant resource adapter provided by this project grants J2EE 1.4 components access to files hosted on file systems. J2EE components can use it to load and store files on local and remote file systems..

GRaPe - a platform-independent software tool for building integrative gene-reaction-protein (GRP) networks. It generates the kinetic equations for each reaction and outputs a SBML document. It also implements two methods for parameter estimation..

HOPPscore is a simple application for evaluating the structural quality of theoretical or experimental protein structures. Protein are evaluated by comparing structure fragments to a reference dictionary of fragments from high resolution structures..

This Resource Adapter enables you to connect your Java application to the 1C Enterprise Information System based on ActiveX and MS SQL Server. It should be compliant to JCA 1.0.

LaJolla can perform 3D alignments of RNA and protein structures. It is fast, simple to use and well tested. LaJolla is successfully published in a peer reviewed journal..

The MailRA resource adapter allows sending and asynchronously (non-polling) receiving of emails. It is coded according to the JCA 1.5 and Java EE 5 standards. The project is coded from scratch, without using source code from Sun..

Software to identify cavities and crevices in proteins. The goal is to be able to take a protein structure, and to differentiate between five different types of environments for each residue: buried, surface, interfacial, cavity, or crevice..

The Protein Geometry Database hosts the development code for a flexible database for searching protein geometry, as well as a library for accessing this data for protein modeling & refinement programs..

The C Protein Folding Library is a minimalistic, high-performance modular library of C functions and data structures for computing folding simulations of proteins on a wide variety of computer hardware..

PepT-IDE is a protein analysis tool that is used for multiple sequence alignment, 3D visualization and displaying protein contact maps for protein sequences and structures. It also has feedback communication between the different views of the protein..

Protein Adapter: Freeware | All

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