Freeware Downloads for "Araxis Merge Ab Initio"

Related: Araxis Merge - Ab Initio Free Software Download - Ab Initio Online Documentation - Ab Initio Packages Free Download - Ab Initio Sample Test Questions

Soft for ab initio and MD simulating of water system. Contains program for ICE: construct ice, specific monte-carlo simulation, proton rearrangement calculations; for PDB-water: calculate rotation energy profile, for Effective Fragment simulations..

A set of computational chemistry modules and programs to perform ab initio calculations of various properties of small molecules.The system will use GRID technology for large computations.The system will use C++ and Qt, running on Win32 and Linux
ab initio Computational Chemistry License - Academic Free License (AFL); Qt Public License (QPL).

  • G4ALL
  • License: Freeware
  • Rating

G4ALL is a software that's been designed in order to allow the user to analyze the contigs generated by the ab initio assembly and produce the genome scaffold after manual curation.

G4ALL was developed with the help of the Java programming language.



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vaspGUI is a small, easy to use application specially designed to offer you a GUI front-end and visualization tools for the Vienna Ab-Initio Simulation Package, also know as VASP. VASP is density functional software which calculates a variety properties of solid state systems.

This application offer you the ability to communicate remotely with supercomputer to access files and run VASP. Visualization tools for POSCAR, KPOINTS, DOSCAR, EIGENVAL, and more.

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  • Platform: Windows
  • Publisher: Tim Hecht
  • Date:

This is a small C program and installer which configures ClearCase to use Araxis Merge for diffs and merges. It works by updating the ClearCase map file to point at it's own executable which converts the arguments passed by ClearCase to those needed for Araxis Merge.

After installing Araxis Merge and ClearCase, download and install ClearMerge. Araxis Merge will then be registered as the ClearCase graphical diff tool. If you have Araxis Merge Pro (or Pro Evaluation), Araxis Merge will also be registered for use as the ClearCase graphical merge tool.

Clearaxis allows you to integrate the Araxis Merge diff tool into ClearCase Clearaxis is a simple application that helps you integrate the Araxis Merge diff tool into ClearCase. Compare.exe that ships with Araxis works for dynamic views but fails on snapshot views. Clearaxis just converts the command line arguments from ClearCase into something that Compare.exe can use.. Genotrance..

  • Platform: WinOther
  • Publisher: genotrance.com
  • Date: 08-10-2009
  • Size: 1464 KB

The Ascalaph Quantum package provides interfaces to ab initio quantum mechanical packages NWChem, CP2K and PC GAMESS / Firefly. Quantum calculations are performed using the PC GAMESS program. FEATURES: Energy calculations : · Energy calculation mode is controlled by selecting the basis and method to account for electron correlation. Optimization: · Geometry optimization is a routine job. The optimization cannot be applied to arbitrary geometry. First, the initial geometry should be close to the desired.

  • Platform: WinOther
  • Publisher: Agile Molecule
  • Date: 14-11-2012
  • Size: 76390 KB

This software searches the potential energy surface of small to medium size atomic systems for global minima using quantum ab initio techniques. It performs bond rotations and molecule translations and rotations on a Linux cluster with MPI..

EVidenceModeler (aka EVM) combines ab initio gene predictions and spliced protein and transcript alignments into weighted consensus gene structure predictions..

PSI is an open-source program for computing molecular properties using high-accuracy, ab initio, quantum mechanical models..

The CCP1GUI project aims to develop a free, extensible Graphical User Interface to various computational chemistry codes developed by the worldwide academic community, with an emphasis on ab initio Quantum Chemistry codes..

  • Platform: Linux, Mac, Windows
  • Publisher: stfc.ac.uk
  • Date: 24-10-2012
  • Size: 3454 KB

DEXA is dedicated to providing post-experiment signal processing of DiffXAS signals. By combining ab initio theory with measured spectra, structural strain parameters may be extracted from the differential signals at an intrinsic, atomic scale..

  • ABFF
  • License: Freeware
  • Rating

Project for develop force fields with using ab-initio calculations
ABFF License - Academic Free License (AFL).

  • Platform: WinOther
  • Publisher: Abff
  • Date:

Python interface to ab-initio HF/DFT code CRYSTAL09 (http://www.crystal.unito.it)
PyCRYSTAL09 License - GNU General Public License (GPL).

  • miRPI
  • License: Freeware
  • Rating

MicroRNAs (miRNAs) are newly discovered class of non-coding small RNAs of 20-24 nucleotide length that regulate gene and protein expression in plants and animals. MiRNAs have so far been identified mostly by specific cloning of small RNA molecules, complemented by computational methods. Computational identification of miRNA is faster and generally follows AB initio and sequence alignment methods. Here we developed MIRPI, a new software that finds highly conserved miRNAs from the given gene sequences by using non-repeated miRNAs of the users interest.

Calibur is an easy to use, efficient utility designed to help you find the decoy with the most number of neighbors within a threshold distance.

Ab Initio protein structure prediction methods generate numerous structural candidates, which are referred to as decoys.

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Gabedit is a graphical user interface to computational chemistry packages like Gamess-US, Gaussian, Molcas, Molpro, MPQC, OpenMopac, Orca, PCGamess and Q-Chem

It can display a variety of calculation results including support for most major molecular file formats. The advanced "Molecule Builder" allows to rapidly sketch in molecules and examine them in 3D. Graphics can be exported to various formats, including animations.



features

* Gabedit can Creates input file for GAMESS(US), GAUSSIAN, MOLCAS, MOLPRO , MPQC, OpenMopac, Orca, PCGamess and Q-Chem.

Adolix Split and Merge PDF is a free product that helps you manage your PDF documents. You can merge PDF files and split PDF documents into multiple files following a custom pattern similar to Word printing. Using our freeware you can combine encrypted PDF files with just a few mouse clicks and mix two PDF files in seconds..

  • Platform: Windows
  • Publisher: Adolix Software
  • Date: 14-05-2010
  • Size: 2885 KB

A simple, easy to use program to merge two pictures into a third one, with a degree of transparency chosen by the user. Many file formats supported. STG Picture Merge..

Free Split and Merge Expectation-Maximization algorithm for Multivariate Gaussian Mixtures. This algorithm is suitable to estimate mixture parameters and the number of conpounds Usage ------- [logl , M , S , P] = fsmem_mvgm(Z , [M0] , [S0] , [P0] , [option]); Inputs ------- Z Measurements (d x N) M0 Initial mean vector. M0 can be (d x 1 x K) (default [Kini random elements from Z]) S0 Initial covariance matrix. S0 can be (d x d x K) (default [cov(Z)/40]) P0 Initial mixture probablities (1 x 1 x K) : (default [1/Kini]) options Kini Initial number of compounds (default [5]) Kmax Maximum number of compounds (default [15]) maxite_fsmem Number of maximum iteration for the main loop of the fsmem (default [100]) maxite_fullem Number of maximum iteration for the full EM inside the main loop (default [100]) maxite_partialem Number...

  • Platform: Matlab, Scripts
  • Publisher: Sebastien Paris
  • Date: 10-04-2013
  • Size: 215 KB

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