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Listing of Science in Education

BMX (Bacterial Makeup eXplorer) computes the core genome size and composition from orthologous maps.
Bacterial Makeup Explorer License - Creative Commons Attribution License.

  • Platform: WinOther
  • JudgeOS
  • License: Freeware
  • Price: 0.00
  • Rating

An online judge system to judge the ACM-ICPC programming contests.
JudgeOS License - GNU Library or Lesser General Public License (LGPL).

  • Publisher: Judgeos
  • Date: 02-08-2013
  • Platform: WinOther

This project is a plugin for PyMOL which will allow the user to identify an unknown molecule by its parts, or the residues that make it up.
Structural Homology for PyMOL License - GNU General Public License (GPL).

  • Platform: WinOther
  • yafemsc
  • License: Freeware
  • Price: 0.00
  • Rating

Yet Another Finite Element Method Source Composition.

This project serves the author to learn more about finite element coding, and it is ought to modestly contribute to science by implementing a readable dimension-independent numerical code..

  • Publisher: Yafemsc
  • Date: 01-08-2013
  • Platform: WinOther

The SIMP/STEP platform provides a fast, efficient, portable abstract framework for interactive and scripted cellular automata and lattice gas computing in the Python environment. SIMP provides a high-level 'programmable matter' laboratory built on
SIMP/STEP, cellular automata in Python License - GNU Library or Lesser General Public License (LGPL).

  • Platform: WinOther
  • Mudcat
  • License: Freeware
  • Price: 0.00
  • Rating

MUDCAT stands for Multi Use Document Correlation and Analysis Tool. The project provides a web-based interface to upload and analyze raw documents with the purpose of identifying documents that correlate to user criteria.
Mudcat License - GNU General Public License (GPL).

  • Publisher: Mudcat
  • Date: 01-08-2013
  • Platform: WinOther

Over 75 C++ function for working with vectors, matrix and quaternions.
Inside the package there is no cycles, if's, classes or structures. Ideal for designing 3D engines.
Headlines of functions are intuitive. For each headline there is a one line comment in Russian.

  • Publisher: Vqmmath
  • Date: 01-08-2013
  • Platform: WinOther
  • MePrId
  • License: Freeware
  • Price: 0.00
  • Rating

MePrId is a Python program which can be used to classify a protein, depending whether it is a membrane or a globular protein. Download link: http://meprid.svn.sourceforge.net/viewvc/meprid.tar.gz?view=tar
MePrId License - GNU General Public License (GPL).

  • Publisher: Meprid
  • Date: 01-08-2013
  • Platform: WinOther

FuXi (pronounced foo-shee) is a forward-chaining production system for Notation 3 Description Logic Programming. It is implemented as a companion to RDFLib which it requires for its various RDF processing.
Fuxi - N3 DLP Reasoner License - MIT License.

  • Publisher: Fuxi
  • Date: 01-08-2013
  • Platform: WinOther

MethylC-pipe is a tool for DNA methylation anlysis.
MethylC-pipe License - GNU General Public License version 3.0 (GPLv3).

  • Platform: WinOther

Velvetrope: a fast, bitwise alignment algorithm on biological sequences.
Documentation - cam.cornell.edu/~sc932/Software.html
Velvetrope License - GNU General Public License (GPL).

  • Platform: WinOther

This is an application generator for conflation algorithms in perl language. This system supports generation perl source code for a stemmer from a rule file, running a stemmer which is supported by the system, parsing a corpus file.
Application Generator for Stemmers License - GNU General Public License (GPL).

  • Publisher: Stemgen
  • Date: 01-08-2013
  • Platform: WinOther
  • at17400
  • License: Freeware
  • Price: 0.00
  • Rating

Audio Test Equipment Suite. Measure and Generate standard audio test signals..

  • Publisher: At17400
  • Date: 01-08-2013
  • Platform: WinOther

This is a grid-based software developed by Java, which transparently enable most of regular bioinformatics programs to perform parallel computing. No re-compiling of target program is required.
biogridjava License - BSD License; GNU Library or Lesser General Public License (LGPL).

  • Platform: WinOther

This is an application that computes the date and time in formats appropriate for astronomers - julian date, sidereal time, modified julian date, truncated julian date. Extremely accurate, includes correction for apparent sidereal time.
Solar Clock License - Academic Free License (AFL).

  • Platform: WinOther
  • New Ties
  • License: Freeware
  • Price: 0.00
  • Rating

This project investigates emerging agent societies undergoing evolutionary, individual, and social learning. The project involves an agent modeling environment, monitoring mechanisms, simulation engine and a distributed p2p platform. All this in Java.

  • Publisher: Newties
  • Date: 01-08-2013
  • Platform: WinOther

This is an open, cross platform SCADA system. SCADA stands for Supervisory Control and Data Acquisition, and is used to create software front-ends to control processes in industry. Created in Java, it has a headless server and uses Swing GUI controls
Open Cross Platform SCADA License - Apache License V2.

  • Platform: WinOther

This project aims to develop standardized software libraries for FIRST Robotics Competition and other robots using the PIC18F8722-based IFI Robot Controller. For more information, see the project homepage.
FRC Libarary License - GNU Library or Lesser General Public License (LGPL).

  • Publisher: Frc-lib
  • Date: 01-08-2013
  • Platform: WinOther

Project VIGO is an implementation of a graphical user and development environment based on the interaction architecture called VIGO (Views, Instruments, Governors, and Objects).
Project VIGO License - BSD License.

  • Platform: WinOther

Perl Bioinformatic Utility Tool I have development during the time I have to analysis Biology data.
PBioUtility License - GNU General Public License version 3.0 (GPLv3).

  • Platform: WinOther

NEQUIM Contact System (NCS) is a system to generate and analyze interaction vectors of protein-ligand complexes. Core features include multiple views of vectors, multiple selection options, cluster analysis and generation of interaction vector model. The input could be from PDB format or from files generated by automatic docking softwares AutoDock/Vina or Surflex.

  • Platform: Linux
  • XScore
  • License: Freeware
  • Price: 0.00
  • Rating

XScore (for eXtendedSwing-core) is aimed at providing a framework for the rigorous and simplified development of Swing UIs which are based on the MVC design pattern with an event management relieved by the repetitive and repulsive aspect of the code.
XScore License - Apache License V2.

  • Platform: WinOther

R-gregmisc is a set of extension package for the open-source statistical environment/language "R''. It includes functions for plotting (gplots), data manupulation (gdata), modeling (gmodels), and programming tools (gtools), creation and management of sub-processes (fork), determing sample sizes for -omics experiments (ssize), and a variety of other packages.

  • Platform: WinOther
  • quantx
  • License: Freeware
  • Price: 0.00
  • Rating

Educational software for studying quantum mechanics.
This is the 3rd incarnation of QUANTX software created for Physics Department of Novosibirsk State University. The first version of this software was used in 1985-1991, and the second one was in use since 1991 till 2011.

  • Publisher: Quantx
  • Date: 01-08-2013
  • Platform: WinOther
  • SNPsel
  • License: Freeware
  • Price: 0.00
  • Rating

SNPsel generates allelic sequences by combining a single sequence with its SNPs, used as input for TFBS prediction programs (MULAN, MAPPER, MatInspector). to find TFBS affected by SNPs on both (allelic) sequences.
SNPsel License - GNU Library or Lesser General Public License (LGPL).

  • Publisher: Snpsel
  • Date: 01-08-2013
  • Platform: WinOther
  • onoEvo
  • License: Freeware
  • Price: 0.00
  • Rating

Simulation-System for cell-evolution according to Darwin's theories.The system consists of a server, simulation-units and several clients.The simulation can be computed by many computers simultaneously.
onoEvo License - GNU General Public License (GPL).

  • Publisher: Onoevo
  • Date: 01-08-2013
  • Platform: WinOther

a I++ (iplusplus) DME development kit and test suite utilities
I++ DME OpenSource Project License - Other License.

  • Platform: WinOther
  • XML EDA
  • License: Freeware
  • Price: 0.00
  • Rating

XML based parsers and translation tools for electronic design automation (EDA). Tools for manipulating netlist formats (e.g. SPICE, Spectre, CDL), languages (e.g. Verilog-AMS, VHDL-AMS, ASM), and other useful text-based formats (e.g. Liberty, Gerber).

  • Publisher: Xmleda
  • Date: 01-08-2013
  • Platform: WinOther

This software detects homologous horizontal gene transfer (HGT) from SNP data. Based on SNP alleles calls and locations, it breaks the genomes into locally colinear blocks, and looks for cases where SNPs do not agree with the vertical pattern of inheritance in a phylogeny.

  • Publisher: Hgtfinder
  • Date: 01-08-2013
  • Size: 909847 KB
  • Platform: Linux, Unix

Use it to tell what your humidity percentage would be at a different temperature
Humidity Differential License - GNU General Public License (GPL); GNU General Public License version 3.0 (GPLv3).

  • Publisher: Humdiff
  • Date: 01-08-2013
  • Size: 2986 KB
  • Platform: WinOther

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