Cola - Contiguous optimal local aligner
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Cola consists of an efficient implementation of a collection of sequence alignment algorithms, extending the Smith-Waterman and Smith-Waterman-Gap-Affine methods by the ability to apply a scoring function that is an arbitrary function of the size of consecutive nucleotide matches.
The code is in C++ and has been designed so that it can be easily configured and to allow for smooth integration as the back-end into seed-finding methods that quickly narrow down the list of candidates for detailed alignments, such as BLAST. As such, Cola is currently integrated into the whole-genome synteny alignment program Satsuma.
Cola - Contiguous optimal local aligner License - GNU Library or Lesser General Public License version 3.0 (LGPLv3)
Free download from Shareware Connection - Cola consists of an efficient implementation of a collection of sequence alignment algorithms, extending the Smith-Waterman and Smith-Waterman-Gap-Affine methods by the ability to apply a scoring function that is an arbitrary function of the size of
Version: 1.0 | Size: 6143 KB | Platform: Linux, Unix
Released Date: | Rating: 0 | Title: Cola - Contiguous optimal local aligner
Author Url: http://sourceforge.net/projects/colaligner
Program Info Url: http://sourceforge.net/projects/colaligner
Download Url: http://sourceforge.net/projects/colaligner/files/latest/download?source=directory
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