Software Listing of Author : "The Regents Of The University Of California"

EGAN is a software tool that allows a bench biologist to visualize and interpret the results of high-throughput exploratory assays in an interactive hypergraph of genes, relationships (protein-protein interactions, literature co-occurrence, etc.) and meta-data (annotation, signaling pathways, etc.). EGAN provides comprehensive, automated calculation of meta-data coincidence (over-representation, enrichment) for user- and assay-defined gene lists, and provides direct links to web resources and literature (NCBI Entrez Gene, PubMed, KEGG, Gene Ontology, iHOP, Google, etc.).

In short, EGAN allows you to perform data-driven discovery of novel systems biology/disease pathways by integrating computational analysis output with a giant gene-centric knowledge base.

Features :

Transcriptomics via expression...

  • Platform: Windows 7, WinOther, WinVista

HyVisual is a visual modeler that was especially designed in order to provide its users with a means of building hybrid systems.

The package includes all the tools one would need to accomplish that task. HyVisual defines continuous dynamics by means of a block diagram tha trepresents ODEs (ordinary differential equations).

  • Platform: Win7 x64, Windows 7, WinOther, WinVista

Ptolemy II is a powerful toolkit that includes many packages and classes coded in Java each with particular functions.

This framework includes all the needed code and documentation to ensure developers can try actor-oriented design. Ptolemy II uses an XML syntax to provide a specific file format.

  • Platform: Win7 x64, Windows 7, WinOther, WinVista
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