Software Listing of Author : "Scri Plant Bioinformatics Group"

New software tools for graphical genotyping and haplotype visualization are required that can routinely handle the large data volumes generated by high throughput SNP and comparable genotyping technologies. Flapjack is a new visualization tool to facilitate analysis of these data types. Its visualizations are rendered in real-time allowing for rapid navigation and comparisons Between lines, markers and chromosomes.

Based on the input of map, genotype and trait data Flapjack is able to provide a number of alternative graphical genotype views with individual alleles coloured by state, Frequency or Similarity to a given standard line. Flapjack supports a range of interactions with the data, including graphically moving lines or markers around the display, insertions or deletions of data, and sorting or clustering of lines by...

  • Platform: Win2000, WinOther
  • Strudel
  • License: Shareware
  • Price:

Strudel is a graphical utility designed to help you visualize genetic and physical maps of genomes for comparative purposes.

The application aims to let the user examine their data at a variety of different levels of resolution, from entire maps to individual markers, and explore syntenic relationships between genomes.

All browsing and interaction with Strudel happens in real-time - there is no need to wait while the maps are generated.


  • Platform: Windows 7, WinOther, WinVista

Strudel is our graphical tool for visualizing genetic and physical maps of genomes for comparative purposes. The application aims to let the user examine their data at a variety of different levels of resolution, from entire maps to individual markers, and explore syntenic relationships between genomes. All browsing and interaction with Strudel happens in real-time - there is no need to wait while the maps are generated. It is built using Java 1.6 and ships with its own JRE, so there is no need for users to install or update Java.

Features:

Visualize multiple genomes and thousands of homologies interactively and in real time
Continuous zoom ranging from entire genome views to singles features
Explore intervals such as QTLs and list annotation for features
Search for features by name
...

  • Platform: Windows 7, Windows 8, WinOther, WinVista
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