Software Listing of Author : "Robert Henson"

There are many formats for mass spectrometry data. The Proteome Commons Project http://www.proteomecommons.org provides a library of functions for reading many of the widely used formats. By using the MATLAB-Java interface you can leverage the functions in the Proteome Commons IO library to allow you to read almost any mass spectrometry data file.

  • Platform: Matlab, Scripts

This includes a function to read in the standard flow cytometry FCS format data and examples of how to visualize the data.

  • Platform: Matlab, Scripts

A number of people have asked me whether MATLAB can add text to heatmaps to show the exact values. This is very easy to do, however, making a the text robust to resizing, zooming and other operations is a little trickier. This example shows how to add text to the heatmap and also includes an M-file that shows how to handle zooming and resizing.

  • Platform: Matlab, Scripts

A COM based interface that allows you to call R functions from within MATLAB. The functions are: openR - Connect to an R server process. evalR - Run an R command. getRdata - Copies an R variable to MATLAB. putRdata - Copies MATLAB data to an R variable. closeR - Close connection to R server process. Rdemo - An example of using R from withing MATLAB.

  • Platform: Matlab, Scripts
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