Software Listing of Author : "Research Imaging Institute"

Scribe is the BrainMap application that is used to extract coordinates and meta-data from a published functional neuroimaging study and enter it in our database.

The BrainMap project is committed to coding all fMRI and PET studies that publish their results in the form of Talairach or MNI coordinates. Several staff members and students in San Antonio code papers into BrainMap on a daily basis. However, the body of literature is quite large. While we have made significant progress, there remains much to be done. If there are any papers that you wish to be included in BrainMap for your own analysis purposes, then we ask you to download Scribe and code those papers yourself.

The first 300 papers entered into BrainMap were chosen by taking 10 highly cited articles from 30 of the most prolific and respected functional...

  • Platform: WinOther

GingerALE is the BrainMap application that is used to perform an ALE meta-analysis on coordinates in Talairach or MNI space. GingerALE can also be used to convert coordinates between MNI and Talairach spaces using the icbm2tal transform.

The ALE meta-analysis method was initially developed by Peter Turkeltaub (Turkeltaub et al., 2002). This method of meta-analysis was adopted by BrainMap in 2003. Several modifications have been made to the ALE algorithm since then, and the current version of our software is reported in Eickhoff et al., 2009.

All output files are written in NIfTI (.nii) format. The input for a meta-analysis in GingerALE is a text file of your foci. Foci can be generated by hand, from an excel worksheet, or as an export of your workspace in BrainMap Sleuth, matching this format. To load these...

  • Platform: WinOther
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