Software Listing of Author : "Jesdodos P. Mena-chalco"

A fast and simple voxel traversal algorithm through a 3D space partition (grid) proposed by J. Amanatides and A. Woo (1987). Author: JesdoDos P. Mena-Chalco. References: [1] "A fast voxel traversal algorithm for ray tracing" J. Amanatides and A. Woo. Eurographics, 87(3), 1987 [2] Other implementations of this algorithm are available from the Web: - http://www.ray-tracing.ru/articles182.html - http://www.clockworkcoders.com/oglsl/rt/gpurt3.htm - http://www.devmaster.net/articles/raytracing_series/part4.php

  • Platform: Matlab, Scripts

Genomic signature using Chaos game representation of frequencies. The zip file includes two examples of genomic signature (A. fulgidus). References: [1] P.J. Deschavanne, A. Giron, J. Vilain, G. Fagot, and B. Fertil. Genomic Signature: Characterization and Classification of Species Assessed by Chaos Game Representation of Sequences. Mol. Biol. Evol. 16(10):1391-1399. 1999.

  • Platform: Matlab, Scripts

A simple m file for the triangle mesh subdivision using linear interpolation. The zip file includes four examples of subdivision. See also the URL: http://www.mathworks.com.au/matlabcentral/fileexchange/24942

  • Platform: Matlab, Scripts
  • MGWT
  • License: Freeware
  • Price: 0.00

MGWT: Identification of protein coding regions using the Modified Gabor-wavelet transform. Sequence of test: F56F11.4.fasta (included into the zip file) http://www.ncbi.nlm.nih.gov/entrez/viewer....de&val=AF099922 http://www.vision.ime.usp.br/~jmena/projec...ome_results/F5/ References: [1] J. P. Mena-Chalco, H. Carrer, Y. Zana, and R. M. Cesar-Jr. Identification of protein coding regions using the modified Gabor-wavelet transform. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 5:198-207, 2008. Supplementary information: http://www.vision.ime.usp.br/~jmena/MGWT/

  • Platform: Matlab, Scripts

Ray/box intersection using Smits' algorithm The zip file includes one example of intersection. References: [1] "Efficiency issues for ray tracing". B. Smits. Journal of Graphics Tools, 3(2):1 14, 1998. [2] "An efficient and robust ray-box intersection algorithm" A. Williams, S. Barrus, and R.K. Morley and P. Shirley. Journal of Graphics, GPU, & Game Tools, 10(1):45-60, 2005. [3] Other algorithms: http://www.realtimerendering.com/intersections.html

  • Platform: Matlab, Scripts

Ray/triangle intersection using the algorithm proposed by MdoTAller and Trumbore (1997). The zip file includes one example of intersection. References: [1] "Real Time Rendering". Third Edition. Tomas Akenine-MdoTAller, Eric Haines and Naty Hoffman. A. K. Peters, Ltd. 2008 (Section 16.8) [2] "Fast, minimum storage ray-triangle intersection". Tomas MdoTAller and Ben Trumbore. Journal of Graphics Tools, 2(1):21--28, 1997. [3] Other algorithms: http://www.realtimerendering.com/intersections.html

  • Platform: Matlab, Scripts
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