Software Listing of Author : "Evan"

Some of the logic from this program was provided from PDBRead.m by Sachin Nikumbh. The version I made is a trimmed down version of it that only outputs the data from one atom type (protein by default), and formats it as convenient cell variables. For smaller PDB files, the time difference between these programs is negligible, but for larger systems of more than 10,000 atoms it can shave off a minute or two. The manual is as follows: ________________________________________________ % -- Manual -- This program is the most speedy way to read a PDB file that I could come up with. It's function is simple: give it a PDB file and out comes a matlab-friendly matrix. In cumbersomely large PDB's (such as those that include solvent), this can shave off a good ammount of time. version 1.0 created by Evan Arthur: University of Michigan, Feb 8,...

  • Publisher: Evan
  • Date Released: 03-03-2013
  • Download Size: 10 KB
  • Download
  • Platform: Matlab, Scripts

%trr2matlab.m by Evan Arthur, University of Michigan, October 2011 Matlab outputs trajectories in a relatively consistent format that is fundamentally challanging and inefficient for Matlab to read directly. This program translates most trr files from recent versions of Gromacs into binary files that can be read quickly and efficiently into Matlab via readGmx2Matlab.m. readGmx2Matlab.m is a sibling program that reads the output of this program. Currently only coordinates, velocities, and forces are output. If I get requests for other outputs (box dimensions, lambda parameters, etc) I'll fit it in. Requirements: - Gromacs trr trajectory file (GMX trn format) tested on version 4.5 and later - readGmx2Matlab.m (reads the output from this script) - Free RAM: not much. Less than 500 kb for most simulations. - Free Hard Disk:...

  • Publisher: Evan
  • Date Released: 13-01-2013
  • Download Size: 205 KB
  • Download
  • Platform: Matlab, Scripts

eEvidence Analyzer is an open source digital forensic analysis toolkit.
eEvidence Analyzer License - GNU General Public License (GPL)

  • Platform: WinOther

Plot a set of stacked bars, but group them according to labels provided. Params: stackData is a 3D matrix (i.e., stackData(i, j, k) => (Group, Stack, StackElement)) groupLabels is a CELL type (i.e., { 'a', 1 , 20, 'foo' };)

  • Publisher: Evan
  • Date Released: 06-01-2013
  • Download Size: 10 KB
  • Download
  • Platform: Matlab, Scripts
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