Software Listing of Author : "Ebi.ac.uk"

BioModels Database is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests. Models presented are annotated and linked to relevant data resources and are available in various format

  • Platform: Linux, Mac OS X, Unix
  • ChEBI
  • License: Freeware
  • Price: 0.00

Chemical Entities of Biological Interest (ChEBI) is a freely available database of chemical compounds and other small molecular entities.
ChEBI License - Artistic License

  • Platform: WinOther
  • Dasty
  • License: Freeware
  • Price: 0.00

Dasty is a web client for visualizing protein sequence feature information using DAS, the Distributed Annotation System.

  • Platform: Linux, Mac OS X, WinOther
  • EFO
  • License: Freeware
  • Price: 0.00

The Experimental Factor Ontology (EFO) available from http://www.ebi.ac.uk/efo is an application focused ontology modeling the experimental factors in ArrayExpress and constructing mappings to multiple existing domain specific ontologies.

  • Platform: WinOther

Submission tool for Microarray experiments

  • Platform: WinOther
  • MIASE
  • License: Freeware
  • Price: 0.00

The Minimum Information About a Simulation Experiment (MIASE) project aims at describing the information needed to run and repeat a numerical simulation experiment derived from a given quantitative model.
MIASE License - Artistic License

  • Platform: WinOther
  • MIRIAM
  • License: Freeware
  • Price: 0.00

Miriam (Minimal Information Requested In the Annotation of biochemical Models) is a standard and a set of tools created to help the processes of annotation and curation of computational models in biology.

  • Platform: Linux, Mac OS X, WinOther
  • PRIDE
  • License: Freeware
  • Price: 0.00

PRIDE: PRoteomics IDEntifications database. Please note that the PRIDE project has relocated to http://code.google.com/p/ebi-pride

  • Platform: Linux, Mac OS X, WinOther

The Systems Biology Ontology project (SBO) goal is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modeling.
Systems Biology Ontology License - Artistic License

  • Platform: WinOther

TRANSFOG DAS (Translational and Functional Onco-Genomics Distributed Annotation System) is an XML-based annotation system to allow the discovery and analysis of candidate genes potentially involved in cancer onset and progression.

  • Platform: Linux, Mac OS X, WinOther
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