Software Listing of Author : "Dna.engr.uconn.edu"

  • IsoEM
  • License: Freeware
  • Price: 0.00

The IsoEM package can be used to infer isoform and gene expression levels from high-throughput transcriptome sequencing (RNA-Seq) data. IsoEM uses a novel expectation-maximization algorithm that exploits read disambiguation information provided by the distribution of insert sizes generated during sequencing library preparation, and takes advantage of base quality scores, strand, and read pairing information (if available). Empirical experiments on synthetic datasets show that the algorithm significantly outperforms existing methods of isoform and gene expression level estimation from RNA-Seq data, for details see our AMB paper.

  • Platform: WinOther

The NGSTools package provides an object model to enable different types of analyses of Next Generation Sequencing (NGS) data, and some utility programs to process reads aligned to different reference genomes. The most important tools in this package are SNVQ, an accurate Single Nucleotide Variants (SNV) detection and genotyping algorithm from base calls and quality scores and a rule set to merge read alignments to a CCDS transcripts library with alignments of the same reads to a reference assembly. The format of choice to process alignments in every tool in this package is SAM, which allows to integrate NGSTools with commonly used mapping programs as Bowtie and other analysis packages like SAMTools

  • Platform: WinOther
New Reviews

Print Inspector

Whether you are using a printer connected to your local desktop computer or a print server sometimes you need to see whats going on in your printer by having a close look at the print jobs sent by the users. Print Inspector is such type software ...


Disk Genius

Disk Genius was formerly known as Partition Guru which is an all-in-one solution for disk partition management, data recovery and disk repairing. It can recover lost files from partition, backup and restore partition table, clone partition or clone ...


Safe In Cloud

It is quite difficult to find any computer users nowadays who do not need to use the web, for any purpose. Whether it is for education or entertainment, the web is your best resource. You also need to use various online services for banking, ...


PictBear

Nowadays, a majority of PC users resort to digital image editing once in a while. It may be required for retouching image captured in smart phones or for creating an album in Facebook. For some people, tinkering with digital images is a pastime too. ...


Panda Cloud Cleaner

PC security has become a tricky and complicated subject both for home users and network supervisors, with complexity and risk factors multiplying over the years. Using a single antivirus app may not be enough anymore. That explains why many users ...


SnapCrab

Nearly every PC users need to take screenshots from time to time, whether it is for personal or professional needs. While using the basic Windows screenshot capture method is available, it is not adequate for everyone. When you want to capture ...


BitKiller

Dealing with various types of data efficiently holds the key to success in any computing task. Apart from generating new data and modifying existing files, it becomes necessary to delete existing files at times. While most users resort to using ...


New Downloads

@SwIt Printfil

Print from DOS, Unix, Linux to
Windows printers: USB, GDI,
PDF, e-mail, network, IP, fax.
Capture LPT1:-LPT9: & ...

Voxal Voice Changer Free
for Mac

Voxal is free voice changer
software for Mac designed to
enhance any game or
application that uses a
microphone. Change ...

Spool Queue Viewer++

Spool Queue Viewer++ is a
feature rich spool queue
viewer that windows should
have by default, we have taken
it to the ...

Pidro Challenge

The Pidro card game - a game
of daring and skill. You and
your computer partner play
against two computer
opponents.

UFS Explorer Professional
Recovery

UFS Explorer Professional
Recovery is a software
solution for a wide range of
data recovery tasks, with
particular focus ...

Easy Card Creator Express

The ideal choice for small to
medium sized organizations and
individuals looking for an
affordable photo ID card ...

Prism Plus Edition

Prism Plus Edition for Windows
is the most comprehensive and
stable multi-format video
converter available. You can
...

Pixillion Image Converter
Software Free

Pixillion Image Converter
Software Free is perfect for
converting your image files
for posting on the web,
emailing to ...

RationalPlan Project Viewer

RationalPlan Project Viewer is
a free project planning
software viewer, the perfect
solution for anyone (from
project ...

IHDP InHouse Digital
Publishing Win/Mac

Digital Publishing Software
Lifetime License- IHDP Page
Flip Software Solution. Take
PDF file and turn it into an
online ...