Software Listing of Author : "Dmitry Fedorov"

Apache Commons Netd-OC?D? library implements the client side of many basic Internet protocols. The purpose of the library is to provide fundamental protocol access, not higher-level abstractions. Therefore, some of the design violates object-oriented design principles. Our philosophy is to make the global functionality of a protocol accessible (e.g., TFTP send file and receive file) when possible, but also provide access to the fundamental protocols where applicable so that the programmer may construct his own custom implementations (e.g, the TFTP packet classes and the TFTP packet send and receive methods are exposed).

Features:

Supported protocols are:

FTP/FTPS
NNTP
SMTP(S)
POP3(S)
Telnet
TFTP
Finger
Whois
rexec/rcmd/rlogin
Time (rdate) and...

  • Platform: WinOther

This application is a command line image conversion utility. It can read and write many image formats, extract ROI and meta-data stored in images. Accepted image formats are: BioRad PIC, TIFF, OME-TIFF, Metamorph STK (uncompressed and LZW compressed), Fluoview, Olympus Image Binary (OIB), Carl Zeiss LSM 5, PSIA TIFF, Nanoscope II/III, JPEG, PNG, BMP, IBW, OME, RAW and video: QuickTime, AVI, MPEG1/2/4, Flash, etc.

Features:

Cross-platform with binaries for Windows, Mac, Linux
Reads many bio image and video formats
Exports several image and video formats
Reads and writes (OME-TIFF) meta-data
Applies many image operations: ROI, enhancement, depth convert, resize, rotate, channel remap, combine frames, etc...

  • Platform: WinOther

bioView3D is an open source and cross-platform application intended for biologists to visualize 3D stack (laser scanning confocal, etc.) imagery. It runs on Windows, MacOS X and Linux.

Features:

Cross-platform with binaries for Windows, Mac, Linux
Reads many bio image and video formats
Reads meta-data from BioRad PIC, TIFF, Metamorph STK (uncompressed and LZW compressed), Fluoview TIFF, Carl Zeiss LSM 5, PSIA TIFF, Nanoscope II/III
Has two modes of rendering: textures and voxels
On-the-fly 3D visualization (mapping/enhancement) of multi-channel data
Export of fly-over video to several popular formats: QuickTime, WMV, AVI, Flash, MPEG1/2/4, etc.
Visualization of graphical annotations: XML GObjects

  • Platform: WinOther

This application is designed to simplify the image annotation process. It allows researchers to create meta-data required by the bio-image database. It can also update, print and upload existing information.

Features:

User-defined meta-data annotations
Powerful graphical annotations with user-defined types
Bio-formats meta-data and file name parsing
Rapid upload for Bisque database
In-place simple statistics for graphical annotations

  • Platform: WinOther
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