Software Listing of Author : "David Rosenkranz"

The Chromatic Dot Plot application is a tool that can be can be used to identify and display regions of high and low similarity within one sequence or between two different sequences.

Furthermore, the color coding allows to identify diagonals even in dotplots that are saturated with low quality matches and thus without the need for multiple testing and adjusting of parameters.


  • Platform: WinOther
  • easyPAC
  • License: Freeware
  • Price: 0.00

easyPAC was specially developed as an accessible and useful instrument for the fast prediction of degenerate primers from alignments and consensus sequences.

It applies all standard quality tests to degenerate primers and primer pairs and optionally maps all primer candidates to an arbitrary number of reference files like repeat databases or genomes to ensure target specifity.

  • Platform: WinOther

The spatial overlap assessor or SOA, for short, is developed as an accessible tool that can help you evaluate the spatial overlap of two groups of individuals based on pairwise spatial distances.

For each group, SOA calculates the average number of individuals assigned to group 1/2 within a defined number of nearest neighbors.

The resulting values indicate the degree of spatial overlap of the two different groups. In order to assess and eliminate the effect of two groups of individuals comprising different sample size, SOA allows to generate resampled datasets in which the number of individuals of the larger group is adjusted to the number of individuals of the smaller sized
group by random selection of an appropriate number of individuals.


  • Platform: WinOther
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