Software Listing of Author : "Computational And Evolutionary Genomics Lab"

SinicView: A visualization environment for comparisons of multiple nucleotide sequence alignment tools

Background

Deluged by the rate and complexity of completed genomic sequences, the need to align longer sequences becomes more urgent, and many more tools have thus been developed. In the initial stage of genomic sequence analysis, a biologist is usually faced with the questions of how to choose the best tool to align sequences of interest and how to analyze and visualize the alignment results, and then with the question of whether poorly aligned regions produced by the tool are indeed not homologous or are just results due to inappropriate alignment tools or scoring systems used. Although several systematic evaluations of multiple sequence alignment (MSA) programs have been proposed, they may not provide a...

  • Platform: Win2000, Windows 7, WinOther, WinServer, WinVista
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