Software Listing of Author : "Bibiserv.techfak.uni-bielefeld.de"

  • Gecko2
  • License: Freeware
  • Price: 0.00

Gecko2 is a further development of the original Gecko software. It allows for the systematic detection of gene cluster conservation in a large number of genomes. The enhancement over the original Gecko tool is the use of set-distance based gene cluster models that allow for the detection of gene clusters with diverse conservation patterns including gaps and missing genes in cluster occurrences. It is also tolerant of errors in gene homology assignment. Gecko2 provides a ranking of the predictions based on statistical significance and an interactive visualization that supports the functional evaluation of the clustered genes.

  • Platform: Windows 7, WinOther, WinVista

Geneview is a visualisation tool to display genetic sequence data stored in nucleic sequence databases like GenBank.
Geneview - Genbank Visualisation Tool License - GNU Library or Lesser General Public License (LGPL)

  • Platform: WinOther

GEvolutionS uses Java WebStart facilities to allow full-featured applications to be launched with just a single-click of a mouse. At least Java 1.5 or newer is needed to run GEvolutionS.

  • Platform: WinOther

RNAhybrid is a tool for finding the minimum free energy hybridisation of a long and a short RNA. The hybridisation is performed in a kind of domain mode, ie. the short sequence is hybridised to the best fitting part of the long one. The tool is primarily meant as a means for microRNA target prediction.

  • Platform: WinOther
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